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Last change
on this file was
5734,
checked in by westram, 16 years ago
|
- added GBT_get_SAI_data
- GBT_first/next_marked_extended → GBT_first/next_marked_SAI
- GBT_first/find_SAI_rel_exdata → GBT_first/find_SAI_rel_SAI_data
- variables renamed: (gb_ex[tended[_data]] → gb_sai[_data])
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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|
File size:
898 bytes
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| Line | |
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| 1 | |
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| 2 | |
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| 3 | #ifndef _ALI_ARBDB_INC_ |
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| 4 | #define _ALI_ARBDB_INC_ |
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| 5 | |
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| 6 | #include "ali_other_stuff.hxx" |
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| 7 | #include "ali_sequence.hxx" |
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| 8 | |
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| 9 | /* |
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| 10 | * Class for accessing the database |
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| 11 | */ |
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| 12 | class ALI_ARBDB { |
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| 13 | private: |
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| 14 | char *alignment; |
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| 15 | |
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| 16 | public: |
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| 17 | GBDATA *gb_main; |
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| 18 | |
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| 19 | ALI_ARBDB(void) { |
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| 20 | alignment = 0; |
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| 21 | gb_main = 0; |
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| 22 | } |
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| 23 | ~ALI_ARBDB(void); |
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| 24 | |
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| 25 | int open(char *name, char *use_alignment = 0); |
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| 26 | void close(void); |
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| 27 | |
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| 28 | void begin_transaction(void) { |
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| 29 | GB_begin_transaction(gb_main); |
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| 30 | } |
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| 31 | void commit_transaction(void) { |
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| 32 | GB_commit_transaction(gb_main); |
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| 33 | } |
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| 34 | |
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| 35 | char *get_sequence_string(char *name, int and_mark = 0); |
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| 36 | ALI_SEQUENCE *get_sequence(char *name, int and_mark = 0); |
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| 37 | char *get_SAI(char *name); |
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| 38 | int put_sequence_string(char *name, char *sequence); |
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| 39 | int put_sequence(char *name, ALI_SEQUENCE *sequence); |
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| 40 | int put_SAI(const char *name, char *sequence); |
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| 41 | }; |
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| 42 | |
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| 43 | |
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| 44 | #endif |
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| 45 | |
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