| 1 | // =========================================================== // |
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| 2 | // // |
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| 3 | // File : fast_aligner.hxx // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Coded by Ralf Westram (coder@reallysoft.de) in 1998 // |
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| 7 | // Institute of Microbiology (Technical University Munich) // |
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| 8 | // http://www.arb-home.de/ // |
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| 9 | // // |
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| 10 | // =========================================================== // |
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| 11 | |
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| 12 | #ifndef FAST_ALIGNER_HXX |
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| 13 | #define FAST_ALIGNER_HXX |
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| 14 | |
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| 15 | |
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| 16 | #define INTEGRATED_ALIGNERS_TITLE "Integrated Aligners" |
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| 17 | |
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| 18 | typedef char* (*AWTC_get_consensus_func)(const char *species_name, int start_pos, int end_pos); |
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| 19 | typedef int (*AWTC_get_selected_range)(int *firstColumn, int *lastColumn); |
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| 20 | typedef GBDATA* (*AWTC_get_first_selected_species)(int *total_no_of_selected_species); |
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| 21 | typedef GBDATA* (*AWTC_get_next_selected_species)(void); |
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| 22 | |
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| 23 | struct AWTC_faligner_cd |
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| 24 | { |
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| 25 | int do_refresh; // if do_refresh==TRUE then AWTC_start_faligning() does a refresh |
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| 26 | void (*refresh_display)(); // via calling refresh_display() |
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| 27 | |
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| 28 | AWTC_get_consensus_func get_group_consensus; |
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| 29 | AWTC_get_selected_range get_selected_range; |
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| 30 | AWTC_get_first_selected_species get_first_selected_species; |
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| 31 | AWTC_get_next_selected_species get_next_selected_species; |
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| 32 | |
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| 33 | char *helix_string; // currently only used for island hopping |
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| 34 | }; |
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| 35 | |
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| 36 | // -------------------------------------------------------------------------------- |
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| 37 | |
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| 38 | AW_window *AWTC_create_faligner_window(AW_root *awr, AW_CL cd2); |
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| 39 | void AWTC_create_faligner_variables(AW_root *root,AW_default db1); |
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| 40 | void AWTC_awar_set_current_sequence(AW_root *root, AW_default db1); |
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| 41 | void AWTC_set_reference_species_name(AW_window */*aww*/, AW_CL cl_AW_root); |
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| 42 | |
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| 43 | void AWTC_start_faligning(AW_window *aw, AW_CL cd2); |
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| 44 | GB_ERROR AWTC_delete_temp_entries(GBDATA *gb_main, GB_CSTR alignment); |
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| 45 | |
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| 46 | // -------------------------------------------------------------------------------- |
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| 47 | |
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| 48 | #else |
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| 49 | #error fast_aligner.hxx included twice |
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| 50 | #endif // FAST_ALIGNER_HXX |
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