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Last change
on this file was
5128,
checked in by westram, 18 years ago
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- removed my own strange defines
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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File size:
1011 bytes
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| Line | |
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| 1 | #ifndef __BASE_H |
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| 2 | #define __BASE_H |
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| 3 | |
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| 4 | #ifndef __DEFINES_H |
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| 5 | #include "defines.h" |
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| 6 | #endif |
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| 7 | |
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| 8 | typedef enum |
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| 9 | { |
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| 10 | BASE_A, |
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| 11 | BASE_C, |
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| 12 | BASE_G, |
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| 13 | BASE_T, |
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| 14 | BASE_DEL |
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| 15 | |
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| 16 | } BaseType; |
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| 17 | |
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| 18 | #define BASETYPES 4 |
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| 19 | #define BASECHARS (BASETYPES+1) |
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| 20 | #define BASEQUAD (BASETYPES*BASETYPES) |
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| 21 | |
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| 22 | #define MAXBASECHAR ((int)'t') /* vom ASCII-Wert her grátes Zeichen */ |
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| 23 | #define PROB_NOT_DEF (-1.0) |
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| 24 | |
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| 25 | #define isDeleted(b) (charIsDelete[(int)(b)]) |
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| 26 | #define isHelical(b) (charIsHelical[(int)(b)]) |
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| 27 | #define isPairing(b1,b2) (basesArePairing[(int)(b1)][(int)(b2)]) |
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| 28 | |
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| 29 | extern char helixBaseChar[BASECHARS], |
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| 30 | loopBaseChar[BASECHARS]; |
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| 31 | extern int basesArePairing[BASECHARS][BASECHARS], /* Kombination paarend? */ |
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| 32 | baseCharType[], |
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| 33 | charIsDelete[], |
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| 34 | charIsHelical[]; |
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| 35 | |
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| 36 | #define char2BaseType(c) ((BaseType)baseCharType[(int)c]) |
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| 37 | |
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| 38 | #ifdef __cplusplus |
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| 39 | extern "C" { |
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| 40 | #endif |
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| 41 | |
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| 42 | void initBaseLookups (void); |
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| 43 | |
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| 44 | #ifdef __cplusplus |
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| 45 | } |
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| 46 | #endif |
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| 47 | |
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| 48 | #endif |
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