|
Last change
on this file was
5128,
checked in by westram, 17 years ago
|
- removed my own strange defines
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1011 bytes
|
| Line | |
|---|
| 1 | #ifndef __BASE_H |
|---|
| 2 | #define __BASE_H |
|---|
| 3 | |
|---|
| 4 | #ifndef __DEFINES_H |
|---|
| 5 | #include "defines.h" |
|---|
| 6 | #endif |
|---|
| 7 | |
|---|
| 8 | typedef enum |
|---|
| 9 | { |
|---|
| 10 | BASE_A, |
|---|
| 11 | BASE_C, |
|---|
| 12 | BASE_G, |
|---|
| 13 | BASE_T, |
|---|
| 14 | BASE_DEL |
|---|
| 15 | |
|---|
| 16 | } BaseType; |
|---|
| 17 | |
|---|
| 18 | #define BASETYPES 4 |
|---|
| 19 | #define BASECHARS (BASETYPES+1) |
|---|
| 20 | #define BASEQUAD (BASETYPES*BASETYPES) |
|---|
| 21 | |
|---|
| 22 | #define MAXBASECHAR ((int)'t') /* vom ASCII-Wert her grátes Zeichen */ |
|---|
| 23 | #define PROB_NOT_DEF (-1.0) |
|---|
| 24 | |
|---|
| 25 | #define isDeleted(b) (charIsDelete[(int)(b)]) |
|---|
| 26 | #define isHelical(b) (charIsHelical[(int)(b)]) |
|---|
| 27 | #define isPairing(b1,b2) (basesArePairing[(int)(b1)][(int)(b2)]) |
|---|
| 28 | |
|---|
| 29 | extern char helixBaseChar[BASECHARS], |
|---|
| 30 | loopBaseChar[BASECHARS]; |
|---|
| 31 | extern int basesArePairing[BASECHARS][BASECHARS], /* Kombination paarend? */ |
|---|
| 32 | baseCharType[], |
|---|
| 33 | charIsDelete[], |
|---|
| 34 | charIsHelical[]; |
|---|
| 35 | |
|---|
| 36 | #define char2BaseType(c) ((BaseType)baseCharType[(int)c]) |
|---|
| 37 | |
|---|
| 38 | #ifdef __cplusplus |
|---|
| 39 | extern "C" { |
|---|
| 40 | #endif |
|---|
| 41 | |
|---|
| 42 | void initBaseLookups (void); |
|---|
| 43 | |
|---|
| 44 | #ifdef __cplusplus |
|---|
| 45 | } |
|---|
| 46 | #endif |
|---|
| 47 | |
|---|
| 48 | #endif |
|---|
Note: See
TracBrowser
for help on using the repository browser.
