|
Last change
on this file was
5485,
checked in by westram, 17 years ago
|
- Summary: - moved common family find awars and their GUI elements to global functions
in awtc_next_neighbours
- Integrated Aligners:
. shortened several function interfaces by using structs
. use custom family find parameters
. store how many base positions of which relative have been used for
alignment (in field 'used_rels'). Do not store relatives of which
no base positions were used.
. respect sort order of relatives given by PT server (dont sort self, just test)
. documented field 'used_rels'
. linked family settings help with aligner help
. added 'Settings'-subdialog to aligner-settings (family_settings.fig)
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File size:
972 bytes
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| Line | |
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| 1 | #FIG 3.2 Produced by xfig version 3.2.5 |
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| 2 | Landscape |
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| 3 | Center |
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| 4 | Metric |
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| 5 | A4 |
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| 6 | 100.00 |
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| 7 | Single |
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| 8 | -2 |
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| 9 | 1200 2 |
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| 10 | 6 5400 1440 6975 1620 |
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| 11 | 4 2 -1 0 0 18 12 0.0000 4 180 885 6975 1575 $to:X:help\001 |
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| 12 | 4 0 -1 0 0 18 12 0.0000 4 180 645 5400 1575 $X:help\001 |
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| 13 | -6 |
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| 14 | 2 1 0 1 -1 -1 0 0 -1 0.000 0 0 -1 0 0 1 |
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| 15 | 1200 1200 |
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| 16 | 2 1 0 1 -1 -1 0 0 -1 0.000 0 0 -1 0 0 1 |
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| 17 | 7110 3960 |
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| 18 | 4 0 -1 0 0 18 12 0.0000 4 165 570 1350 1575 $close\001 |
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| 19 | 4 1 -1 0 0 18 12 0.0000 4 180 4230 4200 1935 Search the nearest relatives of species to align\001 |
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| 20 | 4 0 -1 0 0 18 12 0.0000 4 180 1110 1350 2385 Oligo length:\001 |
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| 21 | 4 0 -1 0 0 18 12 0.0000 4 180 870 2925 2385 $oligo_len\001 |
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| 22 | 4 0 -1 0 0 18 12 0.0000 4 135 1140 1350 2835 Mismatches:\001 |
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| 23 | 4 0 -1 0 0 18 12 0.0000 4 165 1185 2925 2835 $mismatches\001 |
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| 24 | 4 0 -1 0 0 18 12 0.0000 4 135 1230 1350 3285 Search mode:\001 |
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| 25 | 4 0 -1 0 0 18 12 0.0000 4 165 585 2925 3285 $mode\001 |
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| 26 | 4 0 -1 0 0 18 12 0.0000 4 135 1170 1350 3735 Match score:\001 |
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| 27 | 4 0 -1 0 0 18 12 0.0000 4 165 600 2925 3735 $score\001 |
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