| 1 | #FIG 2.1 |
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| 2 | 80 2 |
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| 3 | 6 29 384 359 534 |
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| 4 | 2 1 0 1 -1 0 0 0 0.000 -1 0 0 |
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| 5 | 29 409 339 409 9999 9999 |
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| 6 | 2 2 0 1 -1 0 0 0 0.000 0 0 0 |
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| 7 | 339 534 339 384 29 384 29 534 339 534 9999 9999 |
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| 8 | 4 1 18 13 0 -1 0 0.00000 4 17 106 304 509 $firstreachedstep |
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| 9 | 4 1 18 13 0 -1 0 0.00000 4 17 247 164 434 show upper case if max >= % |
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| 10 | 4 1 18 13 0 -1 0 0.00000 4 17 62 239 439 $leastmax |
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| 11 | 4 1 18 15 0 -1 0 0.00000 4 18 127 189 404 condense statistic |
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| 12 | 4 1 18 13 0 -1 0 0.00000 4 17 183 149 469 threshold (in per cent of max) |
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| 13 | 4 1 18 13 0 -1 0 0.00000 4 15 77 304 474 $firsttoreach |
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| 14 | 4 1 18 13 0 -1 0 0.00000 4 17 229 149 504 step to increase character in per cent |
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| 15 | -6 |
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| 16 | 6 59 309 159 358 |
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| 17 | 4 1 18 13 0 -1 0 0.00000 4 17 94 109 358 $gridhorizontal |
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| 18 | 4 1 18 13 0 -1 0 0.00000 4 15 92 109 326 horizontal grid |
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| 19 | -6 |
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| 20 | 6 229 309 309 358 |
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| 21 | 4 1 18 13 0 -1 0 0.00000 4 17 77 269 358 $gridvertical |
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| 22 | 4 1 18 13 0 -1 0 0.00000 4 15 74 269 326 vertical grid |
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| 23 | -6 |
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| 24 | 2 1 0 1 -1 0 0 0 0.000 -1 0 0 |
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| 25 | 29 74 339 74 9999 9999 |
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| 26 | 2 1 1 1 -1 0 0 0 4.000 -1 0 0 |
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| 27 | 29 164 334 164 339 164 9999 9999 |
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| 28 | 2 2 0 1 -1 0 0 0 0.000 0 0 0 |
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| 29 | 339 199 339 49 29 49 29 199 339 199 9999 9999 |
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| 30 | 2 2 0 1 -1 0 0 0 0.000 0 0 0 |
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| 31 | 344 544 344 9 24 9 24 544 344 544 9999 9999 |
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| 32 | 2 1 0 1 -1 0 0 0 0.000 -1 0 0 |
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| 33 | 29 241 339 241 9999 9999 |
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| 34 | 2 2 0 1 -1 0 0 0 0.000 0 0 0 |
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| 35 | 339 369 339 214 29 214 29 369 339 369 9999 9999 |
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| 36 | 4 0 18 13 0 -1 0 0.00000 4 15 40 34 34 $close |
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| 37 | 4 1 18 15 0 -1 0 0.00000 4 18 121 184 69 calculate statistic |
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| 38 | 4 1 18 13 0 -1 0 0.00000 4 15 177 134 184 memory needed for partition |
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| 39 | 4 1 18 13 0 -1 0 0.00000 4 15 90 264 189 $mempartition |
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| 40 | 4 1 18 13 0 -1 0 0.00000 4 17 59 264 149 $partition |
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| 41 | 4 1 18 13 0 -1 0 0.00000 4 17 97 264 109 $leastcompares |
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| 42 | 4 1 18 13 0 -1 0 0.00000 4 17 96 134 149 size of partition |
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| 43 | 4 1 18 13 0 -1 0 0.00000 4 17 112 134 114 of two sequences |
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| 44 | 4 1 18 13 0 -1 0 0.00000 4 17 110 134 94 minimum overlap |
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| 45 | 4 1 18 13 0 -1 0 0.00000 4 17 301 184 263 show only columns which are at least calculated |
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| 46 | 4 1 18 13 0 -1 0 0.00000 4 15 65 109 295 $leastaccu |
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| 47 | 4 1 18 13 0 -1 0 0.00000 4 17 293 184 288 out of sequence-pairs of that distance |
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| 48 | 4 1 18 15 0 -1 0 0.00000 4 18 83 184 236 show graph |
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