| 1 | #FIG 2.1 |
|---|
| 2 | 80 2 |
|---|
| 3 | 2 2 0 1 -1 0 0 0 0.000 0 0 0 |
|---|
| 4 | 489 359 489 159 159 159 159 359 489 359 9999 9999 |
|---|
| 5 | 2 2 0 1 -1 0 0 0 0.000 0 0 0 |
|---|
| 6 | 639 519 639 39 39 39 39 519 639 519 9999 9999 |
|---|
| 7 | 4 0 18 12 0 -1 0 0.00000 4 15 38 54 69 $close |
|---|
| 8 | 4 0 18 12 0 -1 0 0.00000 4 15 37 194 149 Target |
|---|
| 9 | 4 0 18 12 0 -1 0 0.00000 4 15 34 109 254 Probe |
|---|
| 10 | 4 0 18 12 0 -1 0 0.00000 4 15 244 54 399 Experimental Parameters (Do not change): |
|---|
| 11 | 4 0 18 12 0 -1 0 0.00000 4 15 463 79 424 Treat base pair as a mismatch when its strength is less than max strength minus: |
|---|
| 12 | 4 0 18 12 0 -1 0 0.00000 4 15 31 554 429 $split |
|---|
| 13 | 4 0 18 12 0 -1 0 0.00000 4 15 53 554 459 $dt_edge |
|---|
| 14 | 4 0 18 12 0 -1 0 0.00000 4 15 18 554 484 $dt |
|---|
| 15 | 4 0 18 12 0 -1 0 0.00000 4 15 70 79 454 Edge misval |
|---|
| 16 | 4 0 18 12 0 -1 0 0.00000 4 15 75 79 484 single misval |
|---|
| 17 | 4 2 18 12 0 -1 0 0.00000 4 15 31 609 69 $help |
|---|
| 18 | 4 2 2 18 0 -1 0 0.00000 4 21 13 189 229 A |
|---|
| 19 | 4 2 2 18 0 -1 0 0.00000 4 21 13 189 269 C |
|---|
| 20 | 4 2 2 18 0 -1 0 0.00000 4 21 15 189 309 G |
|---|
| 21 | 4 1 2 18 0 -1 0 0.00000 4 21 13 269 189 A |
|---|
| 22 | 4 1 2 18 0 -1 0 0.00000 4 21 13 329 189 C |
|---|
| 23 | 4 1 2 18 0 -1 0 0.00000 4 21 15 389 189 G |
|---|
| 24 | 4 1 2 18 0 -1 0 0.00000 4 21 18 269 229 $0 |
|---|
| 25 | 4 1 2 18 0 -1 0 0.00000 4 21 18 269 269 $4 |
|---|
| 26 | 4 1 2 18 0 -1 0 0.00000 4 21 18 329 229 $1 |
|---|
| 27 | 4 1 2 18 0 -1 0 0.00000 4 21 18 389 229 $2 |
|---|
| 28 | 4 1 2 18 0 -1 0 0.00000 4 21 18 449 229 $3 |
|---|
| 29 | 4 1 2 18 0 -1 0 0.00000 4 21 18 329 269 $5 |
|---|
| 30 | 4 1 2 18 0 -1 0 0.00000 4 21 18 389 269 $6 |
|---|
| 31 | 4 1 2 18 0 -1 0 0.00000 4 21 18 449 269 $7 |
|---|
| 32 | 4 1 2 18 0 -1 0 0.00000 4 21 18 269 309 $8 |
|---|
| 33 | 4 1 2 18 0 -1 0 0.00000 4 21 18 329 309 $9 |
|---|
| 34 | 4 1 2 18 0 -1 0 0.00000 4 21 27 389 309 $10 |
|---|
| 35 | 4 1 2 18 0 -1 0 0.00000 4 21 27 449 309 $11 |
|---|
| 36 | 4 1 2 18 0 -1 0 0.00000 4 21 27 269 349 $12 |
|---|
| 37 | 4 1 2 18 0 -1 0 0.00000 4 21 27 329 349 $13 |
|---|
| 38 | 4 1 2 18 0 -1 0 0.00000 4 21 27 389 349 $14 |
|---|
| 39 | 4 1 2 18 0 -1 0 0.00000 4 21 27 449 349 $15 |
|---|
| 40 | 4 1 2 18 0 -1 0 0.00000 4 21 31 449 189 U/T |
|---|
| 41 | 4 2 2 18 0 -1 0 0.00000 4 21 31 189 349 U/T |
|---|
| 42 | 4 0 18 12 0 -1 0 0.00000 4 15 196 54 119 Relative Strength of Base Pairings |
|---|
