| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | #Please insert subtopic references (line starts with keyword SUB) |
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| 6 | SUB rename.hlp |
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| 7 | |
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| 8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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| 9 | |
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| 10 | #************* Title of helpfile !! and start of real helpfile ******** |
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| 11 | TITLE Synchronize species IDs |
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| 12 | |
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| 13 | OCCURRENCE ARB_NT/Species/Synchronize IDs |
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| 14 | |
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| 15 | DESCRIPTION Automatically creates unique identifiers (=shortnames) for the |
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| 16 | species entries in the database. The entries are identified by |
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| 17 | their accession numbers (public databases). |
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| 18 | These IDs are created using information from the 'full_name'. |
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| 19 | Usually, the first three letters are taken from the genus designation, |
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| 20 | the remaining letters from the species name. |
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| 21 | |
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| 22 | If there are duplicated entries (same accession number - |
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| 23 | different 'full_name'; no accession number - same 'full_name') |
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| 24 | the different versions are indicated by appending running |
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| 25 | numbers separated from the 'name' by a dot. |
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| 26 | |
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| 27 | Select the 'Synchronize IDs' entry of the 'Species' menu to display |
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| 28 | the 'Synchronize species IDs' window. |
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| 29 | |
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| 30 | NOTES The IDs are stored with the database. They are protected versus change |
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| 31 | to avoid assigning the same ID to different species. |
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| 32 | |
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| 33 | It is recommended to assign accession numbers (field 'acc') to species |
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| 34 | entries (sequences) which are not from public databases and therefore |
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| 35 | dont have an accession number yet. This is done automatically when |
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| 36 | importing new sequences. |
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| 37 | |
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| 38 | EXAMPLES None |
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| 39 | |
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| 40 | WARNINGS None |
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| 41 | |
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| 42 | BUGS No bugs known |
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