Last change
on this file was
7800,
checked in by westram, 13 years ago
|
merge from dev [7687] [7692] [7693] [7694] [7695] [7697] [7706] [7707] [7708]
- replaced 'char' (heap-array of heap-char*) by new class StrArray
- added several tests for StrArray
- removed function flavours using element result parameter (e.g. GBT_get_tree_names_and_count)
- split StrArray into StrArray (heap), ConstStrArray (just pointers) and base class (CharPtrArray)
- use ConstStrArray in several cases (e.g. config, and alignment names)
- GBT_split_string
- changed allocation: dups source and does destructive split (similar to strtok)
- returns ConstStrArray instead of char
- added destructive versions (GBT_splitNdestroy_string)
- refactored parsePositions / parseCSV using ConstStrArray
|
File size:
1.2 KB
|
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1 | // ============================================================= // |
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2 | // // |
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3 | // File : MG_adapt_ali.hxx // |
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4 | // Purpose : // |
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5 | // // |
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6 | // Institute of Microbiology (Technical University Munich) // |
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7 | // http://www.arb-home.de/ // |
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8 | // // |
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9 | // ============================================================= // |
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10 | |
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11 | #ifndef MG_ADAPT_ALI_HXX |
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12 | #define MG_ADAPT_ALI_HXX |
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13 | |
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14 | #ifndef ARBDB_BASE_H |
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15 | #include <arbdb_base.h> |
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16 | #endif |
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17 | #ifndef ARB_STRARRAY_H |
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18 | #include <arb_strarray.h> |
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19 | #endif |
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20 | |
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21 | class MG_remap; |
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22 | |
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23 | struct MG_remaps : virtual Noncopyable { |
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24 | int n_remaps; |
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25 | ConstStrArray alignment_names; |
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26 | MG_remap **remaps; |
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27 | |
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28 | MG_remaps(GBDATA *gb_left, GBDATA *gb_right, bool enable, const char *reference_species_names); |
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29 | ~MG_remaps(); |
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30 | }; |
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31 | |
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32 | |
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33 | GB_ERROR MG_transfer_all_alignments(MG_remaps *remaps, GBDATA *source_species, GBDATA *destination_species); |
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34 | |
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35 | #else |
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36 | #error mg_adapt_ali.hxx included twice |
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37 | #endif // MG_ADAPT_ALI_HXX |
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