1 | /* This file is generated by aisc_mkpt. |
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2 | * Any changes you make here will be overwritten later! |
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3 | */ |
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4 | |
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5 | #ifndef NT_LOCAL_PROTO_H |
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6 | #define NT_LOCAL_PROTO_H |
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7 | |
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8 | /* define ARB attributes: */ |
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9 | #ifndef ATTRIBUTES_H |
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10 | # include <attributes.h> |
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11 | #endif |
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12 | |
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13 | |
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14 | /* AP_consensus.cxx */ |
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15 | void AP_create_consensus_var(AW_root *aw_root, AW_default aw_def); |
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16 | AW_window *AP_create_con_expert_window(AW_root *aw_root); |
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17 | AW_window *AP_create_max_freq_window(AW_root *aw_root); |
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18 | |
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19 | /* AP_pos_var_pars.cxx */ |
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20 | AW_window *AP_create_pos_var_pars_window(AW_root *root); |
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21 | |
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22 | /* ColumnStat_2_gnuplot.cxx */ |
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23 | AW_window *NT_create_colstat_2_gnuplot_window(AW_root *root); |
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24 | |
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25 | /* NT_branchAnalysis.cxx */ |
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26 | |
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27 | class AWT_canvas; |
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28 | |
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29 | AW_window *NT_create_branch_analysis_window(AW_root *aw_root, AWT_canvas *ntw); |
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30 | |
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31 | /* NT_cb.cxx */ |
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32 | |
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33 | #ifndef ARBDB_BASE_H |
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34 | #include <arbdb_base.h> |
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35 | #endif |
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36 | #ifndef AW_BASE_HXX |
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37 | #include <aw_base.hxx> |
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38 | #endif |
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39 | class AWT_canvas; |
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40 | |
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41 | void NT_delete_mark_all_cb(void *, AWT_canvas *ntw); |
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42 | AW_window *NT_create_select_tree_window(AW_root *awr, const char *awar_tree); |
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43 | void NT_select_bottom_tree(AW_window *aww, const char *awar_tree); |
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44 | void NT_create_alignment_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main); |
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45 | AW_window *NT_create_alignment_admin_window(AW_root *root, AW_window *aw_popmedown); |
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46 | AW_window *NT_create_select_alignment_window(AW_root *awr); |
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47 | void NT_system_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file); |
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48 | void NT_system_in_xterm_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file); |
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49 | |
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50 | /* NT_concatenate.cxx */ |
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51 | void NT_createConcatenationAwars(AW_root *aw_root, AW_default aw_def); |
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52 | AW_window *NT_createMergeSimilarSpeciesWindow(AW_root *aw_root); |
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53 | AW_window *NT_createConcatenationWindow(AW_root *aw_root); |
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54 | |
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55 | /* NT_dbrepair.cxx */ |
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56 | GB_ERROR NT_repair_DB(GBDATA *gb_main); |
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57 | void NT_rerepair_DB(AW_window *, AW_CL cl_gbmain, AW_CL dummy_1x); |
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58 | |
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59 | /* NT_edconf.cxx */ |
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60 | void NT_popup_configuration_admin(AW_window *aw_main, AW_CL cl_ntw, AW_CL dummy_1x); |
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61 | AW_window *NT_create_startEditorOnOldConfiguration_window(AW_root *awr); |
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62 | void NT_start_editor_on_tree(AW_window *, int use_species_aside, AWT_canvas *ntw); |
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63 | |
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64 | /* NT_extern.cxx */ |
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65 | void NT_start(const char *arb_ntree_args, bool restart_with_new_ARB_PID); |
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66 | void NT_exit(AW_window *aws, AW_CL exitcode); |
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67 | void NT_restart(AW_root *aw_root, const char *arb_ntree_args); |
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68 | GBT_TREE *NT_get_tree_root_of_canvas(AWT_canvas *ntw); |
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69 | int NT_get_canvas_id(AWT_canvas *ntw); |
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70 | void NT_create_main_window(AW_root *aw_root); |
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71 | |
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72 | /* NT_import.cxx */ |
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73 | void NT_import_sequences(AW_window *aww, AW_CL dummy_1x, AW_CL dummy_2x); |
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74 | |
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75 | /* NT_join.cxx */ |
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76 | AW_window *NT_create_species_join_window(AW_root *root); |
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77 | |
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78 | /* NT_main.cxx */ |
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79 | GB_ERROR NT_format_all_alignments(GBDATA *gb_main); |
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80 | |
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81 | /* NT_sort.cxx */ |
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82 | void NT_resort_data_by_phylogeny(AW_window *, AW_CL cl_ntw, AW_CL dummy_1x); |
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83 | void NT_create_resort_awars(AW_root *awr, AW_default aw_def); |
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84 | AW_window *NT_create_resort_window(AW_root *awr); |
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85 | |
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86 | /* NT_trackAliChanges.cxx */ |
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87 | void NT_create_trackAliChanges_Awars(AW_root *root, AW_default properties); |
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88 | AW_window *NT_create_trackAliChanges_window(AW_root *root); |
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89 | |
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90 | /* NT_userland_fixes.cxx */ |
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91 | void NT_repair_userland_problems(void); |
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92 | |
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93 | /* NT_validManual.cxx */ |
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94 | void NT_createValidNamesAwars(AW_root *aw_root, AW_default aw_def); |
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95 | AW_window *NT_create_searchManuallyNames_window(AW_root *aw_root); |
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96 | |
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97 | /* NT_validNames.cxx */ |
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98 | void NT_deleteValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x); |
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99 | void NT_importValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x); |
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100 | void NT_suggestValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x); |
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101 | |
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102 | /* ad_ext.cxx */ |
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103 | void NT_create_extendeds_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main); |
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104 | AW_window *NT_create_extendeds_window(AW_root *aw_root); |
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105 | |
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106 | /* ad_spec.cxx */ |
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107 | void NT_count_different_chars(AW_window *, AW_CL cl_gb_main, AW_CL dummy_1x); |
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108 | void NT_create_sai_from_pfold(AW_window *aww, AW_CL ntw, AW_CL dummy_1x); |
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109 | |
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110 | /* ad_transpro.cxx */ |
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111 | AW_window *NT_create_dna_2_pro_window(AW_root *root); |
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112 | AW_window *NT_create_realign_dna_window(AW_root *root); |
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113 | void NT_create_transpro_variables(AW_root *root, AW_default props); |
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114 | |
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115 | /* ad_trees.cxx */ |
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116 | AW_window *NT_create_consense_window(AW_root *aw_root); |
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117 | AW_window *NT_create_sort_tree_by_other_tree_window(AW_root *aw_root, AWT_canvas *ntw); |
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118 | void NT_create_multifurcate_tree_awars(AW_root *aw_root, AW_default props); |
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119 | AW_window *NT_create_multifurcate_tree_window(AW_root *aw_root, AWT_canvas *ntw); |
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120 | |
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121 | #else |
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122 | #error NT_local_proto.h included twice |
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123 | #endif /* NT_LOCAL_PROTO_H */ |
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