|
Last change
on this file was
7623,
checked in by westram, 14 years ago
|
- merge from dev [7450] [7452] [7456] [7457] [7458] [7459] [7460] [7461] [7464] [7465] [7466] [7467] [7468] [7469] [7482]
- tweaked compiler options
- activated -Weffc++
- postfilter warnings where Scott Meyers' advices are too general.
- base classes should not always have virtual destructors, since that renders tiny classes useless and
- members should not always be initialized via initialization list, since that often violates the DRY principle
- fix gcc's inability to detect that Noncopyable implements a private copy-ctor and op=
- this slows down complete ARB recompilation by ~5%
- added -Wold-style-cast (inactive)
- removed -Wno-non-template-friend added in [7447]
- postcompile.pl
- added option —original to show unmodified compiler output
- declared op= for classes which had a copy-ctor
- moved op= macros to arbtools.h
- derived classes containing pointers from Noncopyable (use Noncopyable virtually) or
- made them copyable if needed (awt_mask_item, KnownDB, Code, AWT_registered_itemtype, GEN_gene, PosGene, PartialSequence, PlugIn, Range, Convaln_exception)
- other related changes
 mask destruction working now
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Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
1.2 KB
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| Line | |
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| 1 | #ifndef PRD_ITEM_HXX |
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| 2 | #define PRD_ITEM_HXX |
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| 3 | |
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| 4 | #include <cstdio> |
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| 5 | #ifndef PRD_GLOBALS_HXX |
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| 6 | #include "PRD_Globals.hxx" |
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| 7 | #endif |
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| 8 | |
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| 9 | struct Item : virtual Noncopyable { |
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| 10 | PRD_Sequence_Pos end_pos; |
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| 11 | PRD_Sequence_Pos start_pos; // index in sequence (or -1 if not yet calculated) |
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| 12 | PRD_Sequence_Pos offset; // index of base in sequence : left = index of first base of primer, right = index of last base of primer |
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| 13 | int length; // count of bases in primer |
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| 14 | |
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| 15 | int GC_ratio; // GC-ratio of primer |
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| 16 | int temperature; // temperature of primer |
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| 17 | |
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| 18 | Item *next; |
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| 19 | |
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| 20 | Item (PRD_Sequence_Pos pos_, PRD_Sequence_Pos offset_, int length_, int ratio_, int temperature_, Item *next_); |
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| 21 | Item (); |
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| 22 | ~Item () {}; |
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| 23 | |
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| 24 | void print (const char *prefix_, const char *suffix_); // print Items's values |
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| 25 | int sprint (char *buf, const char *prefix_, const char *suffix_, int max_primer_length, int max_position_length, int max_length_length); |
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| 26 | char* getPrimerSequence (const char *sequence_); // return the string the Item describes |
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| 27 | }; |
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| 28 | |
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| 29 | #else |
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| 30 | #error PRD_Item.hxx included twice |
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| 31 | #endif // PRD_ITEM_HXX |
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