|
Last change
on this file was
8535,
checked in by westram, 12 years ago
|
- scaling of relative scores in 'Next neighbour search' can be configured now
- scale vs source or target POC (or min/max of both)
- added toggles to 'Search next neighbours of …'
- added tests
- help (score/scaling)
- describe new options
- fix wrong facts
|
|
File size:
1.3 KB
|
| Line | |
|---|
| 1 | // ============================================================= // |
|---|
| 2 | // // |
|---|
| 3 | // File : PT_global_defs.h // |
|---|
| 4 | // Purpose : global defines for pt-server and its clients // |
|---|
| 5 | // // |
|---|
| 6 | // Coded by Ralf Westram (coder@reallysoft.de) in March 2012 // |
|---|
| 7 | // Institute of Microbiology (Technical University Munich) // |
|---|
| 8 | // http://www.arb-home.de/ // |
|---|
| 9 | // // |
|---|
| 10 | // ============================================================= // |
|---|
| 11 | |
|---|
| 12 | #ifndef PT_GLOBAL_DEFS_H |
|---|
| 13 | #define PT_GLOBAL_DEFS_H |
|---|
| 14 | |
|---|
| 15 | enum FF_complement { |
|---|
| 16 | FF_FORWARD = 1, |
|---|
| 17 | FF_REVERSE = 2, |
|---|
| 18 | FF_REVERSE_COMPLEMENT = 4, |
|---|
| 19 | FF_COMPLEMENT = 8, |
|---|
| 20 | |
|---|
| 21 | // do NOT change the order here w/o fixing ../PROBE/PT_family.cxx@FF_complement_dep |
|---|
| 22 | }; |
|---|
| 23 | |
|---|
| 24 | enum RelativeScoreScaling { |
|---|
| 25 | RSS_BOTH_MIN = 0, // scale versus minimum basecount of source+target seq (hardcoded before [8520]) |
|---|
| 26 | RSS_BOTH_MAX, // scale versus maximum basecount of source+target seq |
|---|
| 27 | RSS_SOURCE, // scale versus source basecount |
|---|
| 28 | RSS_TARGET, // scale versus target basecount |
|---|
| 29 | }; |
|---|
| 30 | |
|---|
| 31 | #else |
|---|
| 32 | #error PT_global_defs.h included twice |
|---|
| 33 | #endif // PT_GLOBAL_DEFS_H |
|---|
Note: See
TracBrowser
for help on using the repository browser.
