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Last change
on this file was
6490,
checked in by westram, 16 years ago
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- moved a few types to arbdb_base.h
- only use arbdb_base.h or arbdb.h where possible
- global included cleanup
- added MBI headers to many files
- moved SQ_ambiguities.SQ_count_ambiguities() to separate object
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-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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File size:
1.5 KB
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| 1 | // ==================================================================== // |
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| 2 | // // |
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| 3 | // File : SQ_ambiguities.h // |
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| 4 | // Purpose : Class used for evaluation of iupac ambiguities // |
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| 5 | // // |
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| 6 | // // |
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| 7 | // Coded by Juergen Huber in July 2003 - February 2004 // |
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| 8 | // Coded by Kai Bader (baderk@in.tum.de) in 2007 - 2008 // |
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| 9 | // Copyright Department of Microbiology (Technical University Munich) // |
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| 10 | // // |
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| 11 | // Visit our web site at: http://www.arb-home.de/ // |
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| 12 | // // |
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| 13 | // ==================================================================== // |
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| 14 | |
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| 15 | #ifndef ARBDB_BASE_H |
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| 16 | #include <arbdb_base.h> |
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| 17 | #endif |
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| 18 | |
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| 19 | #define seq_assert(bed) arb_assert(bed) |
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| 20 | |
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| 21 | class SQ_ambiguities { |
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| 22 | int number; |
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| 23 | int percent; |
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| 24 | int iupac_value; |
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| 25 | |
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| 26 | public: |
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| 27 | SQ_ambiguities() |
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| 28 | : number(0) |
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| 29 | , percent(0) |
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| 30 | , iupac_value(0) |
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| 31 | {} |
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| 32 | |
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| 33 | void SQ_count_ambiguities(const char *iupac, int length, GBDATA * gb_quality); |
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| 34 | |
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| 35 | int SQ_get_nr_ambiguities() const { return number; } |
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| 36 | int SQ_get_percent_ambiguities() const { return percent; } |
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| 37 | int SQ_get_iupac_value() const { return iupac_value; } |
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| 38 | }; |
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| 39 | |
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