source: branches/profile/SL/TRANSLATE/Translate.hxx

Last change on this file was 8607, checked in by westram, 14 years ago

merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] [8142] [8143] [8144] [8222]
(this revives the reverted patches [8129] [8130] [8131] [8132]; see [8133])

  • fixes
    • some free/delete mismatches
    • wrong definition of ORF objects (Level was no bit value)
    • amino consensus (failed for columns only containing 'C')
  • rename
    • AA_sequence_term → orf_term
    • ED4_sequence_terminal_basic → ED4_abstract_sequence_terminal
  • cleaned up hierarchy dumps
  • tweaked is_terminal()/to_terminal()
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.3 KB
Line 
1// =============================================================== //
2//                                                                 //
3//   File      : Translate.hxx                                     //
4//   Purpose   :                                                   //
5//                                                                 //
6//   Coded by Ralf Westram (coder@reallysoft.de) in June 2006      //
7//   Institute of Microbiology (Technical University Munich)       //
8//   http://www.arb-home.de/                                       //
9//                                                                 //
10// =============================================================== //
11
12#ifndef TRANSLATE_HXX
13#define TRANSLATE_HXX
14
15#ifndef ARBDB_BASE_H
16#include <arbdb_base.h>
17#endif
18
19
20GB_ERROR AWT_getTranslationInfo(GBDATA *gb_species, int& arb_transl_table, int &codon_start);
21GB_ERROR AWT_saveTranslationInfo(GBDATA *gb_species, int arb_transl_table, int codon_start);
22GB_ERROR AWT_removeTranslationInfo(GBDATA *gb_species);
23
24int AWT_pro_a_nucs_convert(int arb_code_nr, char *data, size_t size, size_t pos, bool translate_all, bool create_start_codon, bool append_stop_codon, int *translatedSize);
25
26#else
27#error Translate.hxx included twice
28#endif // TRANSLATE_HXX
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