|
Last change
on this file was
7040,
checked in by westram, 14 years ago
|
- merged from refactor [6875] [6876] [6877] [6878] [6879] [6880] [6881] [6882] [6892] [6893] [6902] [6909] [6919] [6920] [6921] [6924] [6938]
- formatted alignment of test-db
- added TEST_ASSERT_TEXTFILE_DIFFLINES
- added special mode that treats different dates as equal
- moved file compare tests to ARBDB (shall goto ARBCORE later)
- added tests for sequence export
- big test indicator
- skip SLOW warning when running under valgrind
- no ':' in patch names
- fixes included:
- do not export full installation path when exporting sequences as xml
- stuffed a leak in XML-exporter
|
|
File size:
1.2 KB
|
| Line | |
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| 1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?> |
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| 2 | <!DOCTYPE ARB_SEQ_EXPORT SYSTEM 'arb_seq_export.dtd' [ |
|---|
| 3 | <!ENTITY nbsp " "> |
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| 4 | <!ENTITY acute "´"> |
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| 5 | <!ENTITY eacute "é"> |
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| 6 | <!ENTITY apostr "'"> |
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| 7 | <!ENTITY semi ";"> |
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| 8 | ]> |
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| 9 | |
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| 10 | <!--There is a basic version of ARB_seq_export.dtd in $ARBHOME/lib/dtd |
|---|
| 11 | but you might need to expand it by yourself, |
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| 12 | because the ARB-database may contain any kind of fields.--> |
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| 13 | <ARB_SEQ_EXPORT database="DBname" export_date="Tue Sep 21 21:09:20 2010"> |
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| 14 | <species name="MetMazei"> |
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| 15 | <ALIGNMENT name="16s"> |
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| 16 | <data>.....................AUUCUGGUU-----GA--U-CC-U-G-CCAG-AG-GU-U-AC-U-GC--U-AU-C--G-GU-GUUC--GC---C-U--AAGCCA-U-GC-G-AGU-CAU-A-UGU---------A---------------..............</data> |
|---|
| 17 | </ALIGNMENT> |
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| 18 | <acc>X69874</acc> |
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| 19 | <full_name>Methanosarcina mazei</full_name> |
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| 20 | <tax> [DEW] Archaea|Euryarchaeota|Methanomicrobium group [EBI] Prokaryota; Bacteria; Mendosicutes; Archaeobacteria;|Methanomicrobiales; Methanosarcinaceae.</tax> |
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| 21 | <seqcheck>ARB_C2C11C55</seqcheck> |
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| 22 | <AL>nov97</AL> |
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| 23 | <ARB_color>2</ARB_color> |
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| 24 | <float_test>3.14159</float_test> |
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| 25 | <bits_test>00000000111101001010000100001010</bits_test> |
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| 26 | </species> |
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| 27 | </ARB_SEQ_EXPORT> |
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