source: branches/profile/UNIT_TESTER/run/tools/read_tree_out_expected.arb

Last change on this file was 11488, checked in by westram, 12 years ago
  • reintegrates 'tree' into 'trunk'
    • implements #417 (multifurcate tree)
    • tree display
      • adds MULTIFURC MODE
      • reordered modes (synchronizes NTREE and PARSIMONY)
    • branch analysis
      • display number of multifurcations in 'mark long branches'
      • display "in-tree-distance" and "per-species-distance"
    • added function to toggle '100%' bootstraps
    • document bug in GBT_remove_leafs (#452)
  • adds:
File size: 2.7 KB
Line 
1/*ARBDB ASCII*/
2tmp                     %% (%
3        message                 %% (%
4                pending                 %% (%
5                        %) /*pending*/
6
7                %) /*message*/
8
9        %) /*tmp*/
10
11tree_data       :7000   %% (%
12        tree_newick             %% (%
13                tree                    "N0.1,0.1;LHelPylor\AN0.1,0.1;N0.1,0.1;N0.1,0.1;LAnaMargi\ALEhrEhrli\ALCowRumin\AN0.1,0.1;LRhdSphae\AN0.1,0.1;LAzoCauli\ALBraJapon\A"
14                nnodes                  %i 6
15                order                   %i 1
16                remark                  "test newick\nunittest-tree\n<date removed for testing>"
17                %) /*tree_newick*/
18
19        tree_newick_sq          %% (%
20                tree                    "N0.1,0.1;LHelPylor\AN0.1,0.1;N0.1,0.1;N0.1,0.1;LAnaMargi\ALEhrEhrli\ALCowRumin\AN0.1,0.1;LRhdSphae\AN0.1,0.1;LAzoCauli\ALBraJapon\A"
21                nnodes                  %i 6
22                order                   %i 2
23                remark                  "test newick_sq\nThe ARB software is a graphically oriented package comprising various tools for\nsequence database handling and data analysis. A central database of processed\n(aligned) sequences and any type of additional data linked to the respective\nsequence entries is structured according to phylogeny or other user defined\ncriteria. Take a look at some features.  To get a quick impression, see how we\npresented ARB on several conferences.\n\nunittest-tree\n<date removed for testing>"
24                %) /*tree_newick_sq*/
25
26        tree_newick_dq          %% (%
27                tree                    "N0.05,0.05;LHelPylor\AN0.05,0.05;N0.05,0.05;N0.05,0.05;LAnaMargi\ALEhrEhrli\ALCowRumin\AN0.05,0.05;LRhdSphae\AN0.05,0.05;LAzoCauli\ALBraJapon\A"
28                nnodes                  %i 6
29                order                   %i 3
30                remark                  "test newick_dq\nunittest-tree\n<date removed for testing>"
31                %) /*tree_newick_dq*/
32
33        tree_newick_group               %% (%
34                tree                    "N0.1,0.1;LHelPylor\AR10%\AN0.1,0.1;R10%\AN0.1,0.1;R10%\AN0.1,0.1;LAnaMargi\ALEhrEhrli\ALCowRumin\AR10%\AN0.1,0.1;LRhdSphae\AR10%\AN0.1,0.1;LAzoCauli\ALBraJapon\A"
35                node                    %% (%
36                        group_name              "inner"
37                        id                      %i 0
38                        %) /*node*/
39
40                node                    %% (%
41                        group_name              "group2"
42                        id                      %i 1
43                        %) /*node*/
44
45                nnodes                  %i 6
46                order                   %i 4
47                remark                  "test newick_group\nunittest-tree\n<date removed for testing>"
48                %) /*tree_newick_group*/
49
50        tree_newick_len         %% (%
51                tree                    "N0.21343,0.02023;LHelPylor\AN0.09626,0.05478;N0.02299,0.08864;N0.05387,0.0572;LAnaMargi\ALEhrEhrli\ALCowRumin\AN0.11648,0.02901;LRhdSphae\AN0.07795,0.09907;LAzoCauli\ALBraJapon\A"
52                nnodes                  %i 6
53                order                   %i 5
54                remark                  "test newick_len\nunittest-tree\n<date removed for testing>"
55                %) /*tree_newick_len*/
56
57        tree_newick_len_group           %% (%
58                tree                    "N0.21343,0.02023;LHelPylor\AN0.09626,0.05478;N0.02299,0.08864;N0.05387,0.0572;LAnaMargi\ALEhrEhrli\ALCowRumin\AN0.11648,0.02901;LRhdSphae\AN0.07795,0.09907;LAzoCauli\ALBraJapon\A"
59                node                    %% (%
60                        group_name              "inner"
61                        id                      %i 0
62                        %) /*node*/
63
64                node                    %% (%
65                        group_name              "group2"
66                        id                      %i 1
67                        %) /*node*/
68
69                nnodes                  %i 6
70                order                   %i 6
71                remark                  "test newick_len_group\nunittest-tree\n<date removed for testing>"
72                %) /*tree_newick_len_group*/
73
74        %) /*tree_data*/
75
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