| 1 | #******************* Syntax *********************************** |
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| 2 | # |
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| 3 | # [USER:]SERVER_ID HOST:IP_NR [programm args] |
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| 4 | # [USER:]SERVER_ID :SOCKETPATH [programm args] |
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| 5 | # [xxx] means optional field |
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| 6 | # all $(enviroment_variable) are replaced by the value of the 'enviroment_variable'. |
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| 7 | # if host is localhost then it is replaced by the result of `hostname`. |
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| 8 | # |
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| 9 | # Specifying an username before the SERVER_ID makes the server user specific. |
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| 10 | # |
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| 11 | # This file is searched at several locations: |
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| 12 | # - in the current directory |
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| 13 | # - in the $(HOME) (=home directory of the current user) |
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| 14 | # - in $(ARBHOME)/lib |
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| 15 | # The first occurrance found is taken. |
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| 16 | # |
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| 17 | # Existing SERVER_IDs: |
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| 18 | # |
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| 19 | # ARB_DB_SERVER Your private database server. It is automatically started |
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| 20 | # ARB_PT_SERVER Default PT_SERVER for PB_RETRIEVE (privat TU_Munich server) |
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| 21 | # ARB_PT_SERVERn Global PT_SERVERs. Needed for fast database search (align seq, probe des.) |
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| 22 | # n starts from 0 to max, no number can be excluded !!! |
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| 23 | # ARB_NAME_SERVER Generates short names for species (using 'acc') |
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| 24 | # ARB_NAME_SERVER_field Generates short names for species (using 'acc' and 'field') |
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| 25 | # |
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| 26 | #***************************************************************** |
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| 27 | |
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| 28 | # version of arb_tcp.dat |
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| 29 | ARB_TCP_DAT_VERSION 2 |
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| 30 | |
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| 31 | #*********** Test Servers ****************** |
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| 32 | |
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| 33 | ARB_TEST_PT_SERVER :$(ARBHOME)/UNIT_TESTER/sockets/pt.socket arb_pt_server -D$(ARBHOME)/UNIT_TESTER/run/TEST_pt.arb |
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| 34 | ARB_TEST_PT_SERVER_GENE :$(ARBHOME)/UNIT_TESTER/sockets/ptgene.socket arb_pt_server -D$(ARBHOME)/UNIT_TESTER/run/TEST_gpt.arb |
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| 35 | |
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| 36 | #*********** Private Servers (for each user) ****************** |
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| 37 | # |
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| 38 | # This is a local server, running on one machine. Each user has his own socket: |
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| 39 | # ARB_PID is an Enviroment Variable which is set by the command 'arb' to its own process id |
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| 40 | # see programm $ARBHOME/SH/arb_clean to remove the sockets |
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| 41 | |
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| 42 | ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) |
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| 43 | |
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| 44 | # If you want to run programs on a workstation cluster, you have to assign your arbdb server |
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| 45 | # and one ip-id for each user. To choose an ip_id choose any number between 1000 and 4000 and |
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| 46 | # examine /etc/services whether this ip-id has not yet been allocated by another programm |
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| 47 | # smith:ARB_DB_SERVER myhost:4011 // socket for smith ('arb' has to be started on 'myhost') |
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| 48 | # ludwig:ARB_DB_SERVER myhost:4012 // socket for ludwig |
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| 49 | # ARB_DB_SERVER :/tmp/arb_db_$(USER)_$(ARB_PID) // and sockets for all others |
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| 50 | |
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| 51 | #*********** Global Servers (for all users) ****************** |
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| 52 | # |
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| 53 | #*********** Nameserver The server should run on the nfs server ****************** |
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| 54 | # The primary nameserver (ARB_NAME_SERVER) uses the field 'acc' for species identification |
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| 55 | # |
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| 56 | # You may define additional nameservers, using one additional field for identification. |
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| 57 | # The defined nameserver 'ARB_NAME_SERVER_START' uses the fields 'acc' and 'start'. |
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| 58 | |
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| 59 | ARB_NAME_SERVER localhost:3020 arb_name_server -d$(ARBHOME)/lib/nas/names.dat |
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| 60 | ARB_NAME_SERVER_START localhost:3021 arb_name_server -d$(ARBHOME)/lib/nas/names_start.dat -fstart=1 |
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| 61 | # ARB_NAME_SERVER_STRAIN localhost:3022 arb_name_server -d$(ARBHOME)/lib/nas/names_strain.dat -fstrain= |
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| 62 | # ARB_NAME_SERVER_POS_START localhost:3023 arb_name_server -d$(ARBHOME)/lib/nas/names_pos_start.dat -fpos_start=1 |
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| 63 | |
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| 64 | #*********** PT_SERVERS The server should run on the nfs server ****************** |
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| 65 | #******* You may add new pt_servers here: (numbers must be continued) ********* |
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| 66 | # Note: If the database name is '!ASSUME_RUNNING' (i.e. -D!ASSUME_RUNNING), ARB will not |
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| 67 | # try to start/stop/update/... the server and will not check DB for existance. |
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| 68 | # To use such a PT-Server you'll have to start it manually on the remote host |
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| 69 | |
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| 70 | ARB_PT_SERVER0 localhost:3030 arb_pt_server -D$(ARBHOME)/lib/pts/probe_server.arb |
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| 71 | ARB_PT_SERVER1 localhost:3031 arb_pt_server -D$(ARBHOME)/lib/pts/LSU_rRNA.arb |
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| 72 | ARB_PT_SERVER2 localhost:3032 arb_pt_server -D$(ARBHOME)/lib/pts/SSU_rRNA.arb |
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| 73 | ARB_PT_SERVER3 :$(HOME)/.arb_pts/$(USER)1.socket arb_pt_server -D$(HOME)/.arb_pts/$(USER)1.arb |
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| 74 | ARB_PT_SERVER4 :$(HOME)/.arb_pts/$(USER)2.socket arb_pt_server -D$(HOME)/.arb_pts/$(USER)2.arb |
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| 75 | ARB_PT_SERVER5 :$(HOME)/.arb_pts/$(USER)3.socket arb_pt_server -D$(HOME)/.arb_pts/$(USER)3.arb |
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| 76 | ARB_PT_SERVER6 localhost:3033 arb_pt_server -D$(ARBHOME)/lib/pts/user1.arb |
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| 77 | ARB_PT_SERVER7 localhost:3034 arb_pt_server -D$(ARBHOME)/lib/pts/user2.arb |
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| 78 | ARB_PT_SERVER8 localhost:3035 arb_pt_server -D$(ARBHOME)/lib/pts/user3.arb |
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| 79 | ARB_PT_SERVER9 localhost:3036 arb_pt_server -D$(ARBHOME)/lib/pts/user4.arb |
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| 80 | ARB_PT_SERVER10 localhost:3037 arb_pt_server -D$(ARBHOME)/lib/pts/user5.arb |
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