|
Last change
on this file was
6096,
checked in by westram, 15 years ago
|
- Again allow display of hidden files in filter list (reverts part of [6082])
- renamed all rarely-used import filters into .importfilter
 has to click on 'Show hidden files' to show these filters or to use them in AUTODETECT
- moved a few sub-filters to nonformats
- added .fasta_contextual_data_1_03.ift (thx to Renzo, Joerg and Frank Oliver)
- added fasta_wacc import/export filters (thx to Harald)
|
|
File size:
724 bytes
|
| Line | |
|---|
| 1 | # HM May 2009 |
|---|
| 2 | # |
|---|
| 3 | # Imports aligned sequences in FASTA-format to ARB. |
|---|
| 4 | # |
|---|
| 5 | # The first attribute in the FASTA header is written to DB field 'name' and |
|---|
| 6 | # the rest to both the fields 'longname' and 'acc' |
|---|
| 7 | |
|---|
| 8 | AUTODETECT ">*" |
|---|
| 9 | |
|---|
| 10 | KEYWIDTH 1 |
|---|
| 11 | |
|---|
| 12 | BEGIN ">??*" |
|---|
| 13 | |
|---|
| 14 | MATCH ">*" |
|---|
| 15 | SRT "* *=*1:*\t*=*1" |
|---|
| 16 | WRITE "name" |
|---|
| 17 | |
|---|
| 18 | MATCH ">*" |
|---|
| 19 | SRT "*|*=*1:*\t*=*1" |
|---|
| 20 | WRITE "full_name" |
|---|
| 21 | |
|---|
| 22 | MATCH ">*" |
|---|
| 23 | SRT "* ARB_GENE*=ARB_GENE*2" |
|---|
| 24 | WRITE "acc" |
|---|
| 25 | |
|---|
| 26 | |
|---|
| 27 | SEQUENCEAFTER "*" |
|---|
| 28 | SEQUENCESRT "" |
|---|
| 29 | SEQUENCEACI "remove("0123456789 /")" |
|---|
| 30 | SEQUENCECOLUMN 0 |
|---|
| 31 | SEQUENCEEND ">*" |
|---|
| 32 | |
|---|
| 33 | DONT_GEN_NAMES |
|---|
| 34 | # CREATE_ACC_FROM_SEQUENCE |
|---|
| 35 | |
|---|
| 36 | END "//" |
|---|
Note: See
TracBrowser
for help on using the repository browser.
