|
Last change
on this file was
11965,
checked in by westram, 12 years ago
|
- move old import filters into '$ARBHOME/lib/import/older'
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
3.3 KB
|
| Line | |
|---|
| 1 | AUTODETECT "LOCUS *\nORIGIN*" |
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| 2 | #Global settings: |
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| 3 | KEYWIDTH 12 |
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| 4 | FILETAG GB |
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| 5 | |
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| 6 | BEGIN "LOCUS*" |
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| 7 | |
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| 8 | MATCH "LOCUS *" |
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| 9 | SRT "* *=*1" |
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| 10 | WRITE "name" |
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| 11 | |
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| 12 | MATCH "ACCESSION *" |
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| 13 | SRT "\"*\"=*1:No information=" |
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| 14 | ACI "extract_words("0123456789",4.0)" |
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| 15 | WRITE "acc" |
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| 16 | |
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| 17 | MATCH "SOURCE *" |
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| 18 | TAG "GB" |
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| 19 | APPEND "source" |
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| 20 | |
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| 21 | MATCH " source*organism=*" |
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| 22 | SRT "*organism\=\"*\"*=*2" |
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| 23 | WRITE "full_name" |
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| 24 | |
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| 25 | MATCH " ORGANISM *" |
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| 26 | SRT "*|*=*1" |
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| 27 | TAG "GB" |
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| 28 | WRITE "db_name" |
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| 29 | |
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| 30 | MATCH " AUTHORS *" |
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| 31 | SRT "No information*=" |
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| 32 | TAG "GB" |
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| 33 | APPEND "author" |
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| 34 | |
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| 35 | MATCH " TITLE *" |
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| 36 | SRT "No information*=" |
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| 37 | TAG "GB" |
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| 38 | APPEND "title" |
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| 39 | |
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| 40 | MATCH " JOURNAL *" |
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| 41 | SRT "No information*=" |
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| 42 | TAG "GB" |
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| 43 | APPEND "journal" |
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| 44 | |
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| 45 | MATCH " MEDLINE *" |
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| 46 | SRT "No information*=" |
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| 47 | TAG "GB" |
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| 48 | APPEND "medline_id" |
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| 49 | |
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| 50 | MATCH " source*strain=*" |
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| 51 | SRT "*strain\=\"*\"*=*2" |
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| 52 | WRITE "strain" |
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| 53 | |
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| 54 | MATCH " source*note*" |
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| 55 | SRT "*/note\=\"*\"*=*2" |
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| 56 | TAG "GB" |
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| 57 | WRITE "description" |
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| 58 | |
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| 59 | MATCH " Protein*note*" |
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| 60 | SRT "*/note\=\"*\"*=*2" |
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| 61 | TAG "GB" |
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| 62 | APPEND "description" |
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| 63 | |
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| 64 | MATCH " Protein*EC_number*" |
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| 65 | SRT "*/EC_number\=\"*\"*=*2" |
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| 66 | TAG "GB" |
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| 67 | APPEND "EC_number" |
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| 68 | |
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| 69 | MATCH " Protein*product=*" |
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| 70 | SRT "*/product\=\"*\"*=*2" |
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| 71 | TAG "GB" |
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| 72 | APPEND "gene_prod" |
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| 73 | |
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| 74 | MATCH "KEYWORDS *" |
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| 75 | TAG "GB" |
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| 76 | WRITE "keywords" |
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| 77 | |
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| 78 | MATCH " CDS*note*" |
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| 79 | SRT "*/note\=\"*\"*=*2" |
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| 80 | TAG "GB" |
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| 81 | APPEND "description" |
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| 82 | |
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| 83 | MATCH " CDS*EC_number*" |
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| 84 | SRT "*/EC_number\=\"*\"*=*2" |
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| 85 | TAG "GB" |
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| 86 | APPEND "EC_number" |
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| 87 | |
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| 88 | MATCH " CDS*product=*" |
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| 89 | SRT "*/product\=\"*\"*=*2" |
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| 90 | TAG "GB" |
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| 91 | APPEND "gene_prod" |
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| 92 | |
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| 93 | MATCH " source*note*" |
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| 94 | SRT "*/note\=\"*\"*=*2" |
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| 95 | TAG "GB" |
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| 96 | WRITE "description" |
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| 97 | |
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| 98 | MATCH " source*clone*" |
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| 99 | SRT "*/clone\=\"*\"*=*2" |
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| 100 | TAG "GB" |
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| 101 | WRITE "clone" |
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| 102 | |
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| 103 | SEQUENCEAFTER "ORIGIN*" |
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| 104 | SEQUENCESRT " =:~=.:*Check*..=" |
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| 105 | SEQUENCEACI "remove("0123456789 /")" |
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| 106 | SEQUENCECOLUMN 0 |
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| 107 | SEQUENCEEND "//" |
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| 108 | CREATE_ACC_FROM_SEQUENCE |
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| 109 | |
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| 110 | END "//" |
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