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Last change
on this file was
493,
checked in by westram, 22 years ago
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added amino count to mod_fields_gc.sellst
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-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
800 bytes
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| Line | |
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| 1 | CNT_NUCS ! count nucleotides, nuc#|sequence|count("agctuAGCTU") |
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| 2 | CNT_NUCS_TERM ! count nucleotides gene, nuc_term#|sequence|filter(SAI=ECOLI,exclude=.-)|count("ACGTU") |
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| 3 | CNT_AACIDS ! count amino acids, aa#|sequence|count("ACDEFGHIKLMNPQRSTVWYacdefghiklmnpqrstvwy") |
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| 4 | GC_CONT ! calculate G+C content, GC#|sequence|count("gcGC");count("agctuAGCTU")|"G+C:";per_cent |
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| 5 | GC_CONTH !calculate G+C content helical parts only, GCH#|sequence|filter(SAI=HELIX;exclude=.-)|count("gcGC");count("agctuAGCTU")|"GCH=";per_cent;"(";cut(2);")" |
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| 6 | GC_CONTNH ! calculate G+C content non helical parts only, GCN#|sequence|filter(SAI=HELIX;include=.-)|count("gcGC");count("agctuAGCTU")|"GCN=";per_cent;"(";cut(2);")" |
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| 7 | |
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