1 | package ARB; |
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2 | |
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3 | my $already_dying = 0; |
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4 | my $in_global_eval = 1; |
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5 | |
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6 | use strict; |
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7 | use vars qw($VERSION @ISA @EXPORT); |
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8 | |
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9 | require Exporter; |
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10 | require DynaLoader; |
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11 | |
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12 | @ISA = qw(Exporter DynaLoader); |
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13 | # Items to export into callers namespace by default. Note: do not export |
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14 | # names by default without a very good reason. Use EXPORT_OK instead. |
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15 | # Do not simply export all your public functions/methods/constants. |
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16 | @EXPORT = qw( |
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17 | set_inGlobalEvalState |
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18 | ); |
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19 | $VERSION = '0.01'; |
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20 | |
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21 | # uncomment next line to debug dyna-loading ARB.so: |
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22 | # $DynaLoader::dl_debug = 1; |
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23 | |
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24 | bootstrap ARB $VERSION; |
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25 | # bootstrapping succeeded (would die otherwise) |
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26 | $in_global_eval = 0; # now allow to call prepare_to_die() |
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27 | |
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28 | # globally catch die, redirect to arb_message, then confess |
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29 | package CORE::GLOBAL; |
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30 | use subs 'die'; |
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31 | |
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32 | sub ARB::set_inGlobalEvalState($) { |
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33 | # hack to make eval-based perl-scripts work with die-catcher (below in 'sub die'). |
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34 | # |
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35 | # if your script uses eval, protect the top-level eval as follows: |
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36 | # |
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37 | # eval { |
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38 | # set_inGlobalEvalState(1); |
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39 | # do_something_that_may_die(); |
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40 | # }; |
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41 | # set_inGlobalEvalState(0); |
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42 | # if ($@) { die $@; } # this call of die will trigger prepare_to_die() below. |
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43 | # |
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44 | my ($state) = @_; |
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45 | $in_global_eval = $state; |
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46 | } |
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47 | |
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48 | sub ARB::notify_and_wait($) { |
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49 | # helper for macros (see ticket #856 for whole story): |
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50 | # |
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51 | # - opens popup displaying 'notification' and a continue button. |
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52 | # |
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53 | # - until pressing the button: |
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54 | # - the macro pauses execution. |
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55 | # - arb GUI may be accessed by user to change settings and/or |
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56 | # select species etc. |
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57 | # |
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58 | # - after pressing the continue button: |
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59 | # - macro execution continues. |
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60 | # |
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61 | my ($notification) = @_; |
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62 | system("arb_wetc -notify \"".$notification."\" -button \"Click when done to continue with macro\""); |
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63 | } |
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64 | |
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65 | sub show_arb_message($) { |
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66 | my ($msg) = @_; |
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67 | $msg =~ s/\n/\\n/g; |
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68 | $msg =~ s/'/"/g; |
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69 | system("arb_message '$msg'"); |
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70 | } |
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71 | |
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72 | sub die { |
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73 | if ($already_dying==0 and $in_global_eval==0) { |
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74 | $already_dying++; # do not recurse |
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75 | |
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76 | ARB::prepare_to_die(); # abort all transactions and close all databases (too avoid deadlock; see #603) |
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77 | |
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78 | my ($msg) = @_; |
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79 | $msg =~ s/\n+$//g; # remove trailing LFs |
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80 | my $errname = 'arb macro/perl execution error'; |
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81 | if ($msg eq '') { $msg = 'unknown '.$errname; } |
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82 | else { $msg = "$errname: '$msg'"; } |
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83 | show_arb_message($msg."\n(see console for details)"); |
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84 | |
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85 | use Carp; |
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86 | Carp::confess("$msg"); # recurses into this sub |
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87 | } |
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88 | else { |
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89 | CORE::die @_; |
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90 | } |
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91 | } |
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92 | |
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93 | # Preloaded methods go here. |
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94 | |
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95 | # Autoload methods go after =cut, and are processed by the autosplit program. |
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96 | |
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97 | 1; |
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98 | __END__ |
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99 | # Below is the stub of documentation for your module. You better edit it! |
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100 | |
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101 | =head1 NAME |
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102 | |
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103 | ARB - Perl extension for ARB |
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104 | |
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105 | =head1 SYNOPSIS |
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106 | |
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107 | use ARB; |
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108 | |
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109 | =head1 DESCRIPTION |
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110 | |
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111 | The ARB perl module provides access to a ARB databases. You may |
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112 | connect to a remote database (e.g. a running instance of ARB_NTREE) or |
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113 | open your own database. |
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114 | |
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115 | =head1 AUTHOR |
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116 | |
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117 | ARB development, devel@arb-home.de |
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118 | |
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119 | =head1 SEE ALSO |
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120 | |
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121 | perl(1). |
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122 | |
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123 | =cut |
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