|
Last change
on this file was
5768,
checked in by westram, 16 years ago
|
- rewrote genome importer
- remove redundant 'translation' entries of genes during import
- whole code is using
- 'pos_start' instead of 'pos_begin*'
- 'pos_stop' instead of 'pos_end*'
- 'pos_certain' instead of 'pos_uncertain*'
- 'pos_complement' instead of 'complement'
- convert gene locations in old genome DBs into new format
- added several gene functions to ARBDB
- GEN_create_nonexisting_gene…()
- GEN_find_or_create_gene..()
- GEN_global_gene_identifier()
- added code to handle gene locations into ARBDB (type GEN_position represents every flavour of a Genbank/EMBL feature location)
- added GBT_write_byte()
- rewrote GBT_read_gene_sequence() (adding GBT_read_gene_sequence_and_length)
- changed codon
 according to NCBI code info
- added start codon(s) for code 3, 9, 13
- changed code names
- when importing to a new
 , reset type if import fails (before ARB had to be restarted, after one try with wrong genome/non-genome import)
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
752 bytes
|
| Line | |
|---|
| 1 | ARB-Input-Mask |
|---|
| 2 | # This is a simple user-mask example. |
|---|
| 3 | |
|---|
| 4 | # What to edit |
|---|
| 5 | @ITEMTYPE=Gene |
|---|
| 6 | |
|---|
| 7 | # Title of the user-mask-window |
|---|
| 8 | @TITLE=Gene: Test mask |
|---|
| 9 | |
|---|
| 10 | # Spacing in window |
|---|
| 11 | @X_SPACING=5 |
|---|
| 12 | @Y_SPACING=3 |
|---|
| 13 | |
|---|
| 14 | # Show edit/reload button |
|---|
| 15 | @EDIT=1 |
|---|
| 16 | |
|---|
| 17 | # --------------------------- |
|---|
| 18 | # The definition of the mask: |
|---|
| 19 | |
|---|
| 20 | @MASK_BEGIN |
|---|
| 21 | |
|---|
| 22 | TEXT("Switch to..") OPENMASK("Basic fields (illegal mask type)","basic_fields.mask") |
|---|
| 23 | |
|---|
| 24 | NEW_SECTION() |
|---|
| 25 | TEXT("You are editing '") SELF() TEXT("'") |
|---|
| 26 | |
|---|
| 27 | NEW_SECTION() |
|---|
| 28 | |
|---|
| 29 | TEXTFIELD("Name ", "name" , 40) |
|---|
| 30 | TEXTFIELD("Start ", "pos_start" , 15) TEXTFIELD("End ", "pos_stop" , 15) CHECKBOX("Complement","pos_complement",0) |
|---|
| 31 | |
|---|
| 32 | TEXTFIELD("Codon start","codon_start",1) |
|---|
| 33 | TEXTFIELD("Note ","note",50) |
|---|
| 34 | |
|---|
| 35 | |
|---|
| 36 | @MASK_END |
|---|
Note: See
TracBrowser
for help on using the repository browser.
