source: branches/properties/lib/sellists/mod_sequence.sellst

Last change on this file was 8696, checked in by westram, 14 years ago
  • merge from saiali log:branches/saiali@8635-8695
    • unalign center (blockop)
    • modify SAI range (using ACI/SRT)
    • align ranges defined by SAI
    • refactorings
      • block ops
      • selection lists
File size: 537 bytes
Line 
1# predefined scripts to modify sequence data
2
3fill region with dots,          :?=.
4fill region with gaps,          :?=-
5fill region with 0,             :?=0
6fill region with 1,             :?=1
7fill region with x,             :?=x
8
9replace dots by gaps,           :.=-
10replace gaps by dots,           :-=.
11replace T by U,                 :T=U:t=u
12replace U by T,                 :U=T:u=t
13
14posvar -> x-region (<=5),       |translate(".-012345","xxxxxxxx","-")
15consolidate x-regions,          :x-x=xxx:xx--xx=xxxxxx:-x-=---:--xx--=------
16
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