|
Last change
on this file was
19708,
checked in by westram, 3 months ago
|
- update doc+gui:
- avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
- instead talk about "ARB main window"
- correct refs to 'ARB/Probes/PT_SERVER Admin'.
- update 'What are marked species?'.
- update protection level documentation (parts already done with previous commit).
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.1 KB
|
| Line | |
|---|
| 1 | # main topics: |
|---|
| 2 | UP arb.hlp |
|---|
| 3 | UP glossary.hlp |
|---|
| 4 | |
|---|
| 5 | # sub topics: |
|---|
| 6 | SUB nt_align_select.hlp |
|---|
| 7 | SUB ad_align.hlp |
|---|
| 8 | SUB pfold.hlp |
|---|
| 9 | |
|---|
| 10 | # format described in ../help.readme |
|---|
| 11 | |
|---|
| 12 | |
|---|
| 13 | TITLE What is an Alignment? |
|---|
| 14 | |
|---|
| 15 | DESCRIPTION Different alignments assigned to the same species (eg. sequences |
|---|
| 16 | of different genes) can be stored in one database. |
|---|
| 17 | The name of the currently accessible alignment (ali_*) is shown |
|---|
| 18 | in the 3rd broad rectangular button in the top area of the |
|---|
| 19 | ARB main window. |
|---|
| 20 | |
|---|
| 21 | The sequences themselves are not stored in the 'ali_*' field of |
|---|
| 22 | a species, but in the subfield 'data' of 'ali_*' |
|---|
| 23 | 'ali_*' is a container field: it holds no data |
|---|
| 24 | except other data fields (like a directory in a file system). |
|---|
| 25 | |
|---|
| 26 | NOTE There is a special alignment called 'ali_genom' which is used |
|---|
| 27 | for full genome databases. |
|---|
| 28 | It's called an alignment because it fits into our database structure, |
|---|
| 29 | but it should NOT contain any gaps. |
|---|
Note: See
TracBrowser
for help on using the repository browser.
