source: branches/sina/HELP_SOURCE/source/arb_edit4.hlp

Last change on this file was 19708, checked in by westram, 3 months ago
  • update doc+gui:
    • avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
      • instead talk about "ARB main window"
    • correct refs to 'ARB/Probes/PT_SERVER Admin'.
    • update 'What are marked species?'.
    • update protection level documentation (parts already done with previous commit).
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.4 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6SUB     man_arb_edit4.hlp
7SUB     e4.hlp
8SUB     species_configs.hlp
9
10# format described in ../help.readme
11
12
13TITLE           How to start ARB_EDIT4
14
15OCCURRENCE      ARB/<3rd small rectangular button in top area>
16                ARB/Sequence/Edit Sequences/Using marked species and tree
17                ARB/Sequence/Edit Sequences/... plus relatives
18                ARB/Sequence/Edit Sequences/Using earlier configuration
19
20DESCRIPTION     The ARB-editor
21
22SECTION How to start ARB_EDIT4?
23
24    Standard:
25
26      To load all marked sequences and all SAI's (defined in current alignment)
27      as they are arranged and grouped in the currently shown tree, either
28
29      * press the editor button in the upper panel (below the 'ali_xxx' button) or
30      * use "Sequence/Edit Sequences/Using marked species and tree"
31
32    Plus relatives:
33
34      To load species as described in 'Standard' above and additionally add a number
35      of closest relatives (=species adjacent to marked species in tree),
36      use "Sequence/Edit Sequences/... plus relatives" and then specify the number
37      of relatives to add.
38
39    Using earlier configurations:
40
41      To load an earlier configuration
42      use "Sequence/Edit Sequences/Using earlier configuration"
43      and select the configuration from the popup window.
44
45      See LINK{species_configs_saveload.hlp} for HOWTO create such configurations.
46
47NOTES           None
48
49EXAMPLES        None
50
51WARNINGS        None
52
53BUGS            No bugs known
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