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Last change
on this file was
19708,
checked in by westram, 3 months ago
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- update doc+gui:
- avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
- instead talk about "ARB main window"
- correct refs to 'ARB/Probes/PT_SERVER Admin'.
- update 'What are marked species?'.
- update protection level documentation (parts already done with previous commit).
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File size:
1.1 KB
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| 1 | # main topics: |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | UP treeadm.hlp |
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| 5 | |
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| 6 | # sub topics: |
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| 7 | #SUB subtopic.hlp |
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| 8 | |
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| 9 | # format described in ../help.readme |
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| 10 | |
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| 11 | |
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| 12 | TITLE Compare tree topologies |
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| 13 | |
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| 14 | OCCURRENCE ARB/Tree/Compare topology |
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| 15 | |
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| 16 | DESCRIPTION Compares the topologies of the source and the destination tree. |
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| 17 | |
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| 18 | For each subtree of the destination tree, the best matching subtree in the source |
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| 19 | tree is searched. |
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| 20 | |
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| 21 | If any source subtree contains the same set of species (while disregarding the |
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| 22 | subtree topology itself), the destination subtree parent branch will not get |
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| 23 | any annotation. |
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| 24 | |
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| 25 | Otherwise the number of differences (i.e. the number of missing plus |
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| 26 | additional species) to the best matching source subtree is written to |
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| 27 | the destination subtree parent branch. |
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| 28 | |
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| 29 | NOTES To remove the generated annotations use LINK{trm_boot.hlp}. |
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| 30 | |
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| 31 | SECTION RELATED |
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| 32 | |
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| 33 | To compare taxonomies use LINK{compare_taxonomy.hlp}. |
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| 34 | |
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| 35 | WARNINGS Calling this function will delete existing bootstrap values from the destination tree. |
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| 36 | |
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| 37 | BUGS far too slow :-( |
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