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Last change
on this file was
19708,
checked in by westram, 3 months ago
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- update doc+gui:
- avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
- instead talk about "ARB main window"
- correct refs to 'ARB/Probes/PT_SERVER Admin'.
- update 'What are marked species?'.
- update protection level documentation (parts already done with previous commit).
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File size:
816 bytes
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| 1 | # main topics: |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | # sub topics: |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # format described in ../help.readme |
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| 9 | |
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| 10 | |
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| 11 | TITLE Count different chars/column |
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| 12 | |
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| 13 | OCCURRENCE ARB/SAI/Other functions/Count different chars column |
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| 14 | |
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| 15 | DESCRIPTION For each column in the alignment of the marked species, |
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| 16 | count the number of different base characters occurring. |
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| 17 | |
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| 18 | Write result as SAI 'COUNTED_CHARS' with the following |
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| 19 | interpretation: |
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| 20 | |
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| 21 | '0' empty column |
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| 22 | '1' only 1 base in this column (conserved column) |
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| 23 | '2'..'9' 2..9 different bases occurred |
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| 24 | 'A'..'Z' 10..25 different bases occurred |
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| 25 | |
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| 26 | NOTES None |
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| 27 | |
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| 28 | EXAMPLES None |
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| 29 | |
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| 30 | WARNINGS None |
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| 31 | |
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| 32 | BUGS No bugs known |
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