source: branches/sina/HELP_SOURCE/source/pd_spec_param.hlp

Last change on this file was 19708, checked in by westram, 3 months ago
  • update doc+gui:
    • avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
      • instead talk about "ARB main window"
    • correct refs to 'ARB/Probes/PT_SERVER Admin'.
    • update 'What are marked species?'.
    • update protection level documentation (parts already done with previous commit).
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1018 bytes
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4UP      probedesign.hlp
5
6#       sub topics:
7#SUB     subtopic.hlp
8
9# format described in ../help.readme
10
11
12TITLE           Probe design (Expert)
13
14OCCURRENCE      ARB/Probes/Design Probes/EXPERT
15
16DESCRIPTION     See LINK{bonds.hlp} for upper area.
17
18                Define threshold for splitting melting domains:
19
20                        Type a value to the 'Threshold for Splitting' subwindow.
21                        This value is subtracted from the mean of all pairing
22                        values of the potential probe target hybrid. If the
23                        resulting value is lower than that of a particular
24                        mispairing, it is assumed that the remaining base paired
25                        stretches melt independently. The dissociation
26                        temperature of the whole hybrid is that of the more
27                        stable part of it.
28
29NOTES           None
30
31EXAMPLES        None
32
33WARNINGS        The criteria used for probe target site ranking are based on
34                experimental experience. However, optimum conditions have to be
35                determined experimentally for the particular probe target
36                hybrids.
37
38BUGS            No bugs known
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