source: branches/sina/HELP_SOURCE/source/sp_mark.hlp

Last change on this file was 19708, checked in by westram, 3 months ago
  • update doc+gui:
    • avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
      • instead talk about "ARB main window"
    • correct refs to 'ARB/Probes/PT_SERVER Admin'.
    • update 'What are marked species?'.
    • update protection level documentation (parts already done with previous commit).
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.8 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6SUB     mark.hlp
7SUB     sp_info.hlp
8
9# format described in ../help.readme
10
11
12TITLE           Marking species
13
14OCCURRENCE      ARB/Species/Mark species/...
15
16DESCRIPTION     Provides several ways to mark species.
17
18                Three general methods are available:
19                         * mark
20                         * unmark
21                         * invert
22
23                Each of these methods can be applied to one of
24                three basic sets, namely
25                     * all species in the database
26                     * all species in the current tree or
27                     * all species NOT in the current tree
28
29                These three sets can be intersected with one of the more specific
30                sets, which are provided by the submenu entries at the bottom of
31                the 'Mark species' menu, namely
32                    * all complete species (see LINK{partial_sequences.hlp}),
33                    * all partial species or
34                    * all species with data in the current alignment.
35
36NOTES           To check the number of marked species
37                - look at the button in the top area of the ARB main window
38                  displaying the number of all marked species or
39                - choose one of the various 'Count marks of .. species ..' from the 'Mark species' menu.
40
41                The "current tree" mentioned above is the tree currently displayed in the main window.
42                When you have multiple ARB main windows open (see LINK{newwindow.hlp}), make sure
43                you use the menu of the intended ARB window.
44
45                When using one or two sets (tree, complete, partial or alignment), all species
46                not included in the set (or in both sets) will not be affected/counted.
47
48EXAMPLES        None
49
50WARNINGS        None
51
52BUGS            No bugs known
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