|
Last change
on this file was
10835,
checked in by westram, 12 years ago
|
- directly build $ARBHOME/bin/muscle
- fixed problematic subdir generation
- create subdir if needed
- recall make on target
- moved unused source files out of sight
|
|
File size:
811 bytes
|
| Line | |
|---|
| 1 | #include "muscle.h" |
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| 2 | #include "pwpath.h" |
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| 3 | #include "timing.h" |
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| 4 | #include "textfile.h" |
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| 5 | #include "msa.h" |
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| 6 | #include "profile.h" |
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| 7 | |
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| 8 | SCORE GlobalAlign(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB, |
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| 9 | unsigned uLengthB, PWPath &Path) |
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| 10 | { |
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| 11 | if (g_bDiags) |
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| 12 | return GlobalAlignDiags(PA, uLengthA, PB, uLengthB, Path); |
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| 13 | else |
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| 14 | return GlobalAlignNoDiags(PA, uLengthA, PB, uLengthB, Path); |
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| 15 | } |
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| 16 | |
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| 17 | SCORE GlobalAlignNoDiags(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB, |
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| 18 | unsigned uLengthB, PWPath &Path) |
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| 19 | { |
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| 20 | switch (g_PPScore) |
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| 21 | { |
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| 22 | case PPSCORE_LE: |
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| 23 | return GlobalAlignLA(PA, uLengthA, PB, uLengthB, Path); |
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| 24 | |
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| 25 | case PPSCORE_SP: |
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| 26 | return GlobalAlignNS(PA, uLengthA, PB, uLengthB, Path); |
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| 27 | |
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| 28 | case PPSCORE_SV: |
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| 29 | return GlobalAlignSimple(PA, uLengthA, PB, uLengthB, Path); |
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| 30 | } |
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| 31 | return 0; |
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| 32 | } |
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