source: branches/species/HELP_SOURCE/source/e4_background_priority.hlp

Last change on this file was 19532, checked in by westram, 7 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 1.4 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6#SUB     subtopic.hlp
7
8# format described in ../help.readme
9
10
11TITLE           Sequence background color priority
12
13DESCRIPTION     Describes the priorities used for selecting background colors used in
14                the sequence area of ARB_EDIT4.
15
16                Following is a list of conditions which are indicated using different background
17                colors. The list is specified in decreasing priority, i.e. conditions towards the
18                top of the list are preferred over conditions towards the bottom.
19
20# --------------------------------------------------------------------------------
21# the corresponding code is in ../../EDIT4/ED4_text_terminals.cxx@COLOR_PRIORITY
22# --------------------------------------------------------------------------------
23
24                    * Search pattern colors (see LINK{e4_search.hlp})
25                    * Range selection (see LINK{e4_block.hlp})
26                    * Colums statistic colors (see LINK{st_ml.hlp})
27                    * SAI colors (see LINK{visualizeSAI.hlp})
28                    * Marked species are drawn with a special background color
29                    * Species colors (see LINK{colorize.hlp} and LINK{color_props_groups.hlp})
30
31                If none of the conditions listed above applies for a sequence (position), the
32                default background color is used.
33
34NOTES           None
35
36EXAMPLES        None
37
38WARNINGS        None
39
40BUGS            No bugs known
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