|
Last change
on this file was
10473,
checked in by westram, 13 years ago
|
- TreeReader
- added two groups to
 -testDB ('"quoted"' and '__bs100') and renamed one leaf
- added tests documenting strange handling of '_'-prefixes of names
|
|
File size:
3.1 KB
|
| Line | |
|---|
| 1 | /*ARBDB ASCII*/ |
|---|
| 2 | genom_db %i 0 |
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| 3 | presets %% (% |
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| 4 | alignment :6000 %% (% |
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| 5 | alignment_name :7600 "ali_new" |
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| 6 | alignment_len :7000 %i -1 |
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| 7 | aligned :7000 %i 1 |
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| 8 | alignment_write_security :7600 %i 0 |
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| 9 | alignment_type :7000 "rna" |
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| 10 | auto_format %i 0 |
|---|
| 11 | alignment_rem "\E\E±934" |
|---|
| 12 | %) /*alignment*/ |
|---|
| 13 | |
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| 14 | key_data %% (% |
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| 15 | key %% (% |
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| 16 | key_name "name" |
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| 17 | key_type %i 12 |
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| 18 | key_hidden %i 0 |
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| 19 | %) /*key*/ |
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| 20 | |
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| 21 | key %% (% |
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| 22 | key_name "acc" |
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| 23 | key_type %i 12 |
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| 24 | key_hidden %i 0 |
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| 25 | %) /*key*/ |
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| 26 | |
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| 27 | key %% (% |
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| 28 | key_name "full_name" |
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| 29 | key_type %i 12 |
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| 30 | key_hidden %i 0 |
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| 31 | %) /*key*/ |
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| 32 | |
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| 33 | key %% (% |
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| 34 | key_name "tmp" |
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| 35 | key_type %i 12 |
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| 36 | key_hidden %i 0 |
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| 37 | %) /*key*/ |
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| 38 | |
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| 39 | %) /*key_data*/ |
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| 40 | |
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| 41 | use "ali_new" |
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| 42 | %) /*presets*/ |
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| 43 | |
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| 44 | tree_data :7000 %% (% |
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| 45 | tree_bootstrap_and_groups %% (% |
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| 46 | tree "R0%\AN0.0608265,0.0608265;N0.152167,0.427084;N0.0360123,0.0210334;R19%\AN0.0179282,0.0298038;R5%\AN0.111214,0.23783;LAticSea6\AR99%\AN0.0848461,0.0420741;LRblAerol\ALRblMesop\AR18%\AN0.0156331,0.0356543;R37%\AN0.0344527,0.0685896;R71%\AN0.0759521,0.0534489;LDnrShiba\ALRsbElon4\ALMmbAlkal\AR62%\AN0.0951137,0.0916022;N0.00149119,0.00881101;LMabPelag\ALMabSalin\ALPaoMaris\AR65%\AN0.0565338,0.0601883;LOnlGran2\ALRsnAnta2\AN0.193864,0.229896;L_MhuCaps\ALThtNivea\AN0.0159966,0.0323678;R80%\AN0.0190015,0.00278518;LLbnMarin\ALLbnzAlb4\ALLbnAlexa\A" |
|---|
| 47 | nnodes %i 15 |
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| 48 | remark "PRG=dnadist CORR=jukes_cantor FILTER=POS_VAR_BY_PARSIMONY PKG=ARB\n[created as copy of 'tree_bootstrap_1000_fixed']" |
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| 49 | security %i 0 |
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| 50 | ruler %% (% |
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| 51 | size %f 0.1 |
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| 52 | LIST %% (% |
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| 53 | ruler_y %f 0 |
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| 54 | ruler_x %f 0 |
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| 55 | text_x %f 0 |
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| 56 | text_y %f 0 |
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| 57 | %) /*LIST*/ |
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| 58 | |
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| 59 | ruler_width %i 0 |
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| 60 | %) /*ruler*/ |
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| 61 | |
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| 62 | node %% (% |
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| 63 | id %i 5 |
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| 64 | group_name "group99" |
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| 65 | grouped %y 1 |
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| 66 | %) /*node*/ |
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| 67 | |
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| 68 | order %i 2 |
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| 69 | node %% (% |
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| 70 | id %i 6 |
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| 71 | group_name "group'18'" |
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| 72 | grouped %y 1 |
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| 73 | %) /*node*/ |
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| 74 | |
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| 75 | node %% (% |
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| 76 | id %i 12 |
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| 77 | group_name "no\"boot\"" |
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| 78 | grouped %y 1 |
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| 79 | %) /*node*/ |
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| 80 | |
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| 81 | node %% (% |
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| 82 | id %i 11 |
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| 83 | group_name "77nu'm\"b\"'ered" |
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| 84 | grouped %y 1 |
|---|
| 85 | %) /*node*/ |
|---|
| 86 | |
|---|
| 87 | node %% (% |
|---|
| 88 | id %i 13 |
|---|
| 89 | group_name "666numbered_noboot" |
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| 90 | grouped %y 1 |
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| 91 | %) /*node*/ |
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| 92 | |
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| 93 | node %% (% |
|---|
| 94 | id %i 2 |
|---|
| 95 | group_name "\"quoted\"" |
|---|
| 96 | %) /*node*/ |
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| 97 | |
|---|
| 98 | node %% (% |
|---|
| 99 | id %i 1 |
|---|
| 100 | group_name "__bs100" |
|---|
| 101 | %) /*node*/ |
|---|
| 102 | |
|---|
| 103 | %) /*tree_bootstrap_and_groups*/ |
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| 104 | |
|---|
| 105 | %) /*tree_data*/ |
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| 106 | |
|---|
| 107 | focus %% (% |
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| 108 | tree_name "tree_bootstrap_and_groups" |
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| 109 | configuration "marked by john" |
|---|
| 110 | %) /*focus*/ |
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| 111 | |
|---|
| 112 | arb_presets %% (% |
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| 113 | viewkey %% (% |
|---|
| 114 | key_text "name" |
|---|
| 115 | len1 %i 12 |
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| 116 | pars "" |
|---|
| 117 | group %i 0 |
|---|
| 118 | leaf %i 1 |
|---|
| 119 | %) /*viewkey*/ |
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| 120 | |
|---|
| 121 | viewkey %% (% |
|---|
| 122 | key_text "full_name" |
|---|
| 123 | len1 %i 30 |
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| 124 | pars "" |
|---|
| 125 | group %i 0 |
|---|
| 126 | leaf %i 1 |
|---|
| 127 | %) /*viewkey*/ |
|---|
| 128 | |
|---|
| 129 | viewkey %% (% |
|---|
| 130 | key_text "" |
|---|
| 131 | len1 %i 30 |
|---|
| 132 | pars "taxonomy(1)" |
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| 133 | group %i 1 |
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| 134 | leaf %i 0 |
|---|
| 135 | %) /*viewkey*/ |
|---|
| 136 | |
|---|
| 137 | viewkey %% (% |
|---|
| 138 | key_text "acc" |
|---|
| 139 | len1 %i 20 |
|---|
| 140 | pars "" |
|---|
| 141 | group %i 0 |
|---|
| 142 | leaf %i 1 |
|---|
| 143 | %) /*viewkey*/ |
|---|
| 144 | |
|---|
| 145 | viewkey %% (% |
|---|
| 146 | key_text "date" |
|---|
| 147 | len1 %i 30 |
|---|
| 148 | pars "" |
|---|
| 149 | group %i 0 |
|---|
| 150 | leaf %i 0 |
|---|
| 151 | %) /*viewkey*/ |
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| 152 | |
|---|
| 153 | %) /*arb_presets*/ |
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| 154 | |
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| 155 | awt %% (% |
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| 156 | dtree %% (% |
|---|
| 157 | max_size %f 2 |
|---|
| 158 | radial %% (% |
|---|
| 159 | %) /*radial*/ |
|---|
| 160 | |
|---|
| 161 | dendro %% (% |
|---|
| 162 | %) /*dendro*/ |
|---|
| 163 | |
|---|
| 164 | %) /*dtree*/ |
|---|
| 165 | |
|---|
| 166 | %) /*awt*/ |
|---|
| 167 | |
|---|
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