source: branches/species/lib/arb_default/ntree.arb

Last change on this file was 8623, checked in by westram, 14 years ago

merge from e4fix [8376] [8377] [8378] [8379] [8380] [8386] [8387] [8388] [8389]

  • do not save AWARs which have default values
    • motivation: edit4-props saved after [8362] did not load with older versions
    • pros:
      • if the user did not change the default, changing the default in code will propagate to the user
    • cons:
      • AWARs used by multiple applications will trigger in non-saving application, when the database containing the awar is saved
        • only happens once if AWAR was previously stored with default-value
        • the most obvious ones were those edit4-search-strings linked to ntree (primer, probe, gene). disarmed them by setting the default to NULL
  • always generate definitions of SAI color translation tables (since default no longer saved)
    • drawback: when user deletes a default color translation table, it will re-appear after restart
  • allow experts to save fast-aligner protection to properties
  • deliver errors exported by awar callbacks (when triggered by widget change)
  • sequence color mapping
    • translate stored old default ('=0') to new default ('') on awar creation
    • removed code talking to AWARs via ARBDB interface - just use AWARs straightforward
  • ignore request_refresh_for_sequence_terminals when there is no hierarchy yet (now triggered by seq colors)
  • lib/arb_default/edit4.arb
    • removed default values (where code defaulted to same value)
    • changed some defaults
      • aligner (explicit, but empty ref)
      • helix setting (stolen from WL)
  • lib/arb_default/ntree.arb
    • removed all values
      • equal to default value
      • obsolete entries (former awar names)
      • entries that are now stored in main DB
  • removed unused AWARS (AWTC_create_rename_awars)
  • default for AWAR_TREE now "" everywhere
  • removed unused AISC variable
  • renamed edit direction related variables/awars
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 68 bytes
Line 
1/*ARBDB ASCII*/
2window                  %% (%
3        foreground              "black"
4        %) /*window*/
5
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