| 1 | <!-- ==================================================================== --> |
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| 2 | <!-- --> |
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| 3 | <!-- File : arb_seq_export.dtd --> |
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| 4 | <!-- Purpose : DTD for ARB sequence export --> |
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| 5 | <!-- --> |
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| 6 | <!-- Coded by Ralf Westram (coder@reallysoft.de) in July 2002 --> |
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| 7 | <!-- Copyright Department of Microbiology (Technical University Munich) --> |
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| 8 | <!-- --> |
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| 9 | <!-- Visit our web site at: http://www.arb-home.de/ --> |
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| 10 | <!-- --> |
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| 11 | <!-- ==================================================================== --> |
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| 12 | <!-- --> |
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| 13 | <!-- Please note: This file is just a templete for you to create --> |
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| 14 | <!-- your own DTD according to your database contents --> |
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| 15 | <!-- --> |
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| 16 | <!-- ==================================================================== --> |
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| 17 | |
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| 18 | <!ELEMENT ARB_SEQ_EXPORT (SPECIES)* > |
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| 19 | <!ATTLIST ARB_SEQ_EXPORT database CDATA #IMPLIED> <!--name of ARB database sequences were exported from--> |
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| 20 | <!ATTLIST ARB_SEQ_EXPORT export_date CDATA #IMPLIED> |
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| 21 | |
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| 22 | <!--1. elements with name attribute--> |
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| 23 | |
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| 24 | <!ELEMENT SPECIES ANY > |
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| 25 | <!ATTLIST SPECIES name ID #REQUIRED> <!--name should always be treated as ID because ARB does the same--> |
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| 26 | |
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| 27 | <!ELEMENT ALIGNMENT (DATA,REMARK?) > |
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| 28 | <!ATTLIST ALIGNMENT name CDATA #REQUIRED> |
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| 29 | |
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| 30 | <!ELEMENT DATA (#PCDATA) > <!--the sequence data--> |
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| 31 | <!ELEMENT REMARK (#PCDATA) > <!--sequence remarks--> |
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| 32 | |
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| 33 | <!-- 2. simple text elements--> |
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| 34 | <!-- 2.1 'Standard' elements--> |
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| 35 | |
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| 36 | <!ELEMENT FULL_NAME (#PCDATA) > |
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| 37 | <!ELEMENT ACC (#PCDATA) > |
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| 38 | <!ELEMENT ARB_COLOR (#PCDATA) > |
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| 39 | |
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| 40 | <!-- 2.2 Other common elements--> |
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| 41 | |
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| 42 | <!ELEMENT BER_ID (#PCDATA) > |
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| 43 | <!ELEMENT BER_DATE (#PCDATA) > |
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| 44 | <!ELEMENT BER_DE (#PCDATA) > |
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| 45 | <!ELEMENT BER_FULL_NAME (#PCDATA) > |
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| 46 | <!ELEMENT BER_TAX (#PCDATA) > |
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| 47 | <!ELEMENT BER_AUTHOR (#PCDATA) > |
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| 48 | <!ELEMENT BER_TITLE (#PCDATA) > |
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| 49 | <!ELEMENT BER_JOURNAL (#PCDATA) > |
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| 50 | <!ELEMENT BER_AC (#PCDATA) > |
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| 51 | |
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