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Last change
on this file was
16564,
checked in by westram, 8 years ago
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-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
565 bytes
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| 1 | AUTODETECT ">*" |
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| 2 | |
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| 3 | DESCRIPTION "Imports sequences in FASTA format (removes gaps)" |
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| 4 | DESCRIPTION "Expected header: '>id fullname|...'" |
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| 5 | |
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| 6 | # Global settings: |
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| 7 | KEYWIDTH 1 |
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| 8 | |
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| 9 | BEGIN ">??*" |
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| 10 | |
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| 11 | MATCH ">*" |
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| 12 | SRT "* *=*1:*\t*=*1" |
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| 13 | WRITE "name" |
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| 14 | |
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| 15 | MATCH ">*" |
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| 16 | SRT "*|*=*1" |
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| 17 | WRITE "full_name" |
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| 18 | |
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| 19 | SEQUENCEAFTER "*" |
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| 20 | SEQUENCESRT "" |
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| 21 | SEQUENCEACI "remove(".-0123456789 /")" |
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| 22 | SEQUENCECOLUMN 0 |
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| 23 | SEQUENCEEND ">*" |
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| 24 | |
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| 25 | # DONT_GEN_NAMES |
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| 26 | CREATE_ACC_FROM_SEQUENCE |
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| 27 | |
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| 28 | END "//" |
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