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| 1 | # HM May 2009 |
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| 2 | |
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| 3 | AUTODETECT ">*ARB_GENE" |
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| 4 | |
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| 5 | DESCRIPTION "Imports sequences in FASTA format (does not remove gaps)" |
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| 6 | DESCRIPTION "Expected header: '>id fullname|...'" |
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| 7 | DESCRIPTION "If header contains 'ARB_GENE...' that will be used as 'acc'" |
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| 8 | |
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| 9 | KEYWIDTH 1 |
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| 10 | |
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| 11 | BEGIN ">??*" |
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| 12 | |
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| 13 | MATCH ">*" |
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| 14 | SRT "* *=*1:*\t*=*1" |
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| 15 | WRITE "name" |
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| 16 | |
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| 17 | MATCH ">*" |
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| 18 | SRT "*|*=*1:*\t*=*1" |
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| 19 | WRITE "full_name" |
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| 20 | |
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| 21 | MATCH ">*" |
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| 22 | SRT "* ARB_GENE*=ARB_GENE*2" |
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| 23 | WRITE "acc" |
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| 24 | |
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| 25 | |
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| 26 | SEQUENCEAFTER "*" |
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| 27 | SEQUENCESRT "" |
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| 28 | SEQUENCEACI "remove("0123456789 /")" |
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| 29 | SEQUENCECOLUMN 0 |
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| 30 | SEQUENCEEND ">*" |
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| 31 | |
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| 32 | DONT_GEN_NAMES |
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| 33 | # CREATE_ACC_FROM_SEQUENCE |
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| 34 | |
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| 35 | END "//" |
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