| 1 | !forget_called_cbs |
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| 2 | !mark_all_called |
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| 3 | !run_all_cbs_alph |
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| 4 | !run_all_cbs_alph_inf |
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| 5 | !run_all_cbs_loc |
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| 6 | !run_all_cbs_loc_inf |
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| 7 | !run_all_cbs_nalph |
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| 8 | !run_all_cbs_nalph_inf |
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| 9 | !run_all_cbs_nloc |
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| 10 | !run_all_cbs_nloc_inf |
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| 11 | !run_all_cbs_rnd |
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| 12 | !run_all_cbs_rnd_inf |
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| 13 | !toggle_expert |
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| 14 | !toggle_focus |
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| 15 | -db_browser |
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| 16 | 1basic_fieldsmask |
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| 17 | 1expertmask |
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| 18 | 1main_fieldsmask |
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| 19 | 1testmask |
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| 20 | 1userInfomask |
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| 21 | ARB_NT/? |
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| 22 | ARB_NT/EDIT_SEQUENCES |
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| 23 | ARB_NT/FOLDED_LIST_TREE_TYPE |
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| 24 | ARB_NT/INFO |
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| 25 | ARB_NT/JUMP |
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| 26 | ARB_NT/LIST_TREE_TYPE |
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| 27 | ARB_NT/NO_TREE_TYPE |
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| 28 | ARB_NT/QUICK_SAVE_AS |
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| 29 | ARB_NT/QUIT |
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| 30 | ARB_NT/RADIAL_TREE_TYPE |
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| 31 | ARB_NT/REDO |
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| 32 | ARB_NT/SAVE |
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| 33 | ARB_NT/SAVE_AS |
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| 34 | ARB_NT/SEARCH |
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| 35 | ARB_NT/SELECT_AN_ALIGNMENT |
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| 36 | ARB_NT/SELECT_A_TREE |
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| 37 | ARB_NT/UNDO |
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| 38 | ARB_NT/beautifyb_tree |
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| 39 | ARB_NT/beautifyc_tree |
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| 40 | ARB_NT/beautifyt_tree |
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| 41 | ARB_NT/branch_analysis |
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| 42 | ARB_NT/justify_branch_lengths |
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| 43 | ARB_NT/mark_duplicates |
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| 44 | ARB_NT/props_tree2 |
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| 45 | ARB_NT/reset_logical_zoom |
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| 46 | ARB_NT/reset_physical_zoom |
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| 47 | ARB_NT/selection_admin2 |
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| 48 | ARB_NT/tree_boot2len |
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| 49 | ARB_NT/tree_group_all |
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| 50 | ARB_NT/tree_group_not_color_0 |
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| 51 | ARB_NT/tree_group_not_color_1 |
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| 52 | ARB_NT/tree_group_not_color_10 |
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| 53 | ARB_NT/tree_group_not_color_11 |
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| 54 | ARB_NT/tree_group_not_color_12 |
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| 55 | ARB_NT/tree_group_not_color_2 |
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| 56 | ARB_NT/tree_group_not_color_3 |
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| 57 | ARB_NT/tree_group_not_color_4 |
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| 58 | ARB_NT/tree_group_not_color_5 |
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| 59 | ARB_NT/tree_group_not_color_6 |
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| 60 | ARB_NT/tree_group_not_color_7 |
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| 61 | ARB_NT/tree_group_not_color_8 |
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| 62 | ARB_NT/tree_group_not_color_9 |
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| 63 | ARB_NT/tree_group_not_marked |
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| 64 | ARB_NT/tree_group_term_groups |
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| 65 | ARB_NT/tree_keep_marked |
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| 66 | ARB_NT/tree_len2boot |
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| 67 | ARB_NT/tree_remove_deleted |
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| 68 | ARB_NT/tree_remove_marked |
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| 69 | ARB_NT/tree_remove_remark |
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| 70 | ARB_NT/tree_reset_lengths |
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| 71 | ARB_NT/tree_scale_lengths |
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| 72 | ARB_NT/tree_select |
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| 73 | ARB_NT/tree_select_latest |
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| 74 | ARB_NT/tree_ungroup_all |
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| 75 | ARB_NT/view_probe_group_result |
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| 76 | Assemble Contigs |
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| 77 | AxML + FastdnaML |
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| 78 | AxML + FastdnaML (max 500 Species) ... |
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| 79 | ClustalW DNA Alignment (fast) |
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| 80 | ClustalW DNA Alignment (slow & accurate) |
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| 81 | ClustalW Profile Alignment |
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| 82 | ClustalW Protein Alignment (fast) |
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| 83 | ClustalW Protein Alignment (slow & accurate) |
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| 84 | ClustalW automatic |
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| 85 | Create ClustalW Profile 2 |
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| 86 | DeSoete Tree fit |
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| 87 | Export sequences to foreign format (Readseq) ... |
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| 88 | FastTree2 (nucleotide) |
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| 89 | Import fields from calc-sheet |
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| 90 | Import sequences using Readseq (slow) ... |
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| 91 | Mafft |
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| 92 | MrBayes |
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| 93 | MrBayes (custom) |
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| 94 | Muscle |
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| 95 | PHYML (Amino acids) |
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| 96 | PHYML (DNA) |
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| 97 | PHYML-20130708 (Amino acids) |
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| 98 | PHYML-20130708 (DNA) |
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| 99 | Phylip DNAPARS |
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| 100 | Phylip Distance Matrix |
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| 101 | Phylip Distance Methods (Original Phylip, Interactive) |
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| 102 | Phylip Distance Methods (Simple GUI Based Interface) |
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| 103 | Phylip PROML |
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| 104 | Phylip PROTPARS |
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| 105 | Positional Variability by Olsons dnamlrates (max 5000 Species, 8000 seqlength) |
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| 106 | Pretty print sequences (slow) ... |
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| 107 | ProbCons |
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| 108 | RAxML (DNA) |
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| 109 | RAxML (Protein) |
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| 110 | Start a slave ARB on a foreign host ... |
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| 111 | TREEPUZZLE ... |
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| 112 | all_tree_remove_deleted |
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| 113 | all_tree_remove_marked |
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| 114 | arb_dist |
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| 115 | arb_pars |
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| 116 | arb_pars_quick |
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| 117 | arb_phyl |
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| 118 | bug_report |
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| 119 | chimera_check |
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| 120 | complete_mark_all |
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| 121 | complete_mark_nontree |
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| 122 | complete_mark_tree |
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| 123 | complete_swap_marked |
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| 124 | complete_swap_marked_nontree |
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| 125 | complete_swap_marked_tree |
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| 126 | complete_unmark_all |
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| 127 | complete_unmark_nontree |
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| 128 | complete_unmark_tree |
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| 129 | consense_tree |
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| 130 | corr_mutat_analysis |
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| 131 | count_different_chars |
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| 132 | count_marked |
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| 133 | db_admin |
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| 134 | debug_arbdb |
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| 135 | del_marked |
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| 136 | del_names |
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| 137 | dna_2_pro |
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| 138 | enable_advices |
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| 139 | enable_questions |
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| 140 | export_nds |
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| 141 | export_pos_var |
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| 142 | export_seqs |
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| 143 | export_to_ARB |
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| 144 | fix_db |
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| 145 | imp_names |
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| 146 | import_seq |
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| 147 | ins_del_col |
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| 148 | ins_del_sai |
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| 149 | join_marked |
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| 150 | macros |
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| 151 | mailing_list |
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| 152 | mark_all |
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| 153 | mark_by_ref |
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| 154 | mark_nontree |
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| 155 | mark_tree |
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| 156 | merge_from |
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| 157 | merge_species |
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| 158 | names_admin |
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| 159 | nds |
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| 160 | new2_arb_edit4 |
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| 161 | new_Species_mask |
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| 162 | new_arb |
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| 163 | new_arb_edit4 |
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| 164 | new_names |
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| 165 | new_window |
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| 166 | old_arb_edit4 |
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| 167 | optimize_db |
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| 168 | partial_mark_all |
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| 169 | partial_mark_nontree |
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| 170 | partial_mark_tree |
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| 171 | partial_swap_marked |
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| 172 | partial_swap_marked_nontree |
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| 173 | partial_swap_marked_tree |
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| 174 | partial_unmark_all |
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| 175 | partial_unmark_nontree |
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| 176 | partial_unmark_tree |
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| 177 | pos_var_dist |
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| 178 | pos_var_pars |
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| 179 | primer_design |
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| 180 | primer_design_new |
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| 181 | print_tree |
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| 182 | probe_design |
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| 183 | probe_match |
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| 184 | probe_multi |
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| 185 | props_menu |
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| 186 | props_tree |
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| 187 | props_www |
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| 188 | pt_server_admin |
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| 189 | quit |
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| 190 | realign_dna |
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| 191 | restart_arb |
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| 192 | sai_admin |
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| 193 | sai_consensus |
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| 194 | sai_max_freq |
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| 195 | sai_pfold |
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| 196 | save_all_as |
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| 197 | save_changes |
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| 198 | save_props |
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| 199 | search_names |
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| 200 | selection_admin |
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| 201 | seq_admin |
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| 202 | seq_concat |
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| 203 | seq_quality |
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| 204 | sort_by_field |
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| 205 | sort_by_tree |
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| 206 | spec_convert_field |
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| 207 | spec_create_field |
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| 208 | spec_del_unused_fields |
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| 209 | spec_delete_field |
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| 210 | spec_refresh_fields |
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| 211 | spec_reorder_fields |
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| 212 | spec_scan_unknown_fields |
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| 213 | spec_unhide_fields |
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| 214 | species_colors |
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| 215 | species_info |
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| 216 | species_search |
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| 217 | species_submission |
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| 218 | sug_names |
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| 219 | swap_marked |
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| 220 | swap_marked_nontree |
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| 221 | swap_marked_tree |
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| 222 | table_admin |
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| 223 | test_compr |
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| 224 | track_changes |
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| 225 | transversion |
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| 226 | tree_2_xfig |
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| 227 | tree_admin |
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| 228 | unmark_all |
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| 229 | unmark_nontree |
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| 230 | unmark_tree |
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| 231 | version_info |
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| 232 | with data_mark_all |
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| 233 | with data_mark_nontree |
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| 234 | with data_mark_tree |
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| 235 | with data_swap_marked |
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| 236 | with data_swap_marked_nontree |
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| 237 | with data_swap_marked_tree |
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| 238 | with data_unmark_all |
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| 239 | with data_unmark_nontree |
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| 240 | with data_unmark_tree |
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| 241 | xterm |
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