1 | #Please insert up references in the next lines (line starts with keyword UP) |
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2 | UP arb.hlp |
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3 | UP glossary.hlp |
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4 | #Please insert subtopic references (line starts with keyword SUB) |
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5 | |
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6 | SUB extended.hlp |
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7 | SUB security.hlp |
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8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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9 | |
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10 | #************* Title of helpfile !! and start of real helpfile ******** |
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11 | TITLE SAI Administration |
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12 | |
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13 | OCCURRENCE ARB_NT/SAI/Manage SAIs |
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14 | |
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15 | DESCRIPTION This tool allows to delete, rename, copy and edit 'SAI' entries. |
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16 | SAI is short for "sequence associated information". |
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17 | |
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18 | The database entries contained in the selected SAI are displayed in the |
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19 | 'Info Box' subwindow. |
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20 | |
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21 | Howto generate SAIs: |
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22 | |
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23 | Most SAIs will be generated by functions from the SAI menu in the ARB main window. |
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24 | |
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25 | It is as well possible to convert a species into an SAI (see LINK{sp_sp_2_ext.hlp}). |
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26 | SAIs can be converted into species entries by pressing the <COPY TO SPECIES> button. |
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27 | |
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28 | It is also possible to calculate SAI (from other SAI) using the LINK{saicalc.hlp}. |
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29 | |
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30 | SAI grouping: |
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31 | |
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32 | Each SAI belongs to a group of SAIs. These groups appear in ARB_EDIT4. |
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33 | Use the 'ASSIGN GROUP' button to define the group membership of the |
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34 | select SAI. |
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35 | |
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36 | SAI editing: |
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37 | |
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38 | Editing SAI data is possible using the sequence editor (see LINK{e4.hlp}). |
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39 | |
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40 | SAI may have alignment specific comments in each ali_xxx-CONTAINER. |
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41 | These comments are stored in the "_TYPE" field. |
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42 | The "EDIT COMMENT" button will always edit the comment associated with the |
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43 | alignment currently selected in the arb main window. |
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44 | |
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45 | Using the "Edit at top" entry, you may define, which SAI |
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46 | show up in the top area of the sequence editor by default. |
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47 | |
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48 | NOTES It may be necessary to set the protection level equal or higher |
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49 | than that assigned to the particular 'SAI' entry. |
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50 | |
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51 | EXAMPLES None |
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52 | |
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53 | WARNINGS None |
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54 | |
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55 | BUGS No bugs known |
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