source: branches/stable/HELP_SOURCE/oldhelp/ad_extended.hlp

Last change on this file was 18463, checked in by westram, 5 years ago
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1#Please insert up references in the next lines (line starts with keyword UP)
2UP      arb.hlp
3UP      glossary.hlp
4#Please insert subtopic references  (line starts with keyword SUB)
5
6SUB     extended.hlp
7SUB     security.hlp
8# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
9
10#************* Title of helpfile !! and start of real helpfile ********
11TITLE           SAI Administration
12
13OCCURRENCE      ARB_NT/SAI/Manage SAIs
14
15DESCRIPTION     This tool allows to delete, rename, copy and edit 'SAI' entries.
16                SAI is short for "sequence associated information".
17
18                The database entries contained in the selected SAI are displayed in the
19                'Info Box' subwindow.
20
21                Howto generate SAIs:
22
23                      Most SAIs will be generated by functions from the SAI menu in the ARB main window.
24
25                      It is as well possible to convert a species into an SAI (see LINK{sp_sp_2_ext.hlp}).
26                      SAIs can be converted into species entries by pressing the <COPY TO SPECIES> button.
27
28                      It is also possible to calculate SAI (from other SAI) using the LINK{saicalc.hlp}.
29
30                SAI grouping:
31
32                      Each SAI belongs to a group of SAIs. These groups appear in ARB_EDIT4.
33                      Use the 'ASSIGN GROUP' button to define the group membership of the
34                      select SAI.
35
36                SAI editing:
37
38                      Editing SAI data is possible using the sequence editor (see LINK{e4.hlp}).
39
40                      SAI may have alignment specific comments in each ali_xxx-CONTAINER.
41                      These comments are stored in the "_TYPE" field.
42                      The "EDIT COMMENT" button will always edit the comment associated with the
43                      alignment currently selected in the arb main window.
44
45                      Using the "Edit at top" entry, you may define, which SAI
46                      show up in the top area of the sequence editor by default.
47
48NOTES           It may be necessary to set the protection level equal or higher
49                than that assigned to the particular 'SAI' entry.
50
51EXAMPLES        None
52
53WARNINGS        None
54
55BUGS            No bugs known
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