|
Last change
on this file was
7184,
checked in by westram, 14 years ago
|
|
merges [7071] [7072] [7073] [7075] [7078] [7079] [7082] [7092] [7094] [7095] from refactor
- moved TOOLS/arb_count_chars.cxx directly into caller (NTREE)
- created helpfile for count chars
- added NTREE to tested units
- added unit test for NT_count_different_chars
- added two test-DBs containing some sequence data (NUC and AA)
- refactored NT_count_different_chars
- added flag to NT_count_different_chars to control status display
- added alias target 'savetest'
|
|
File size:
1.0 KB
|
| Line | |
|---|
| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
|---|
| 2 | UP arb.hlp |
|---|
| 3 | UP glossary.hlp |
|---|
| 4 | |
|---|
| 5 | #Please insert subtopic references (line starts with keyword SUB) |
|---|
| 6 | #SUB subtopic.hlp |
|---|
| 7 | |
|---|
| 8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
|---|
| 9 | |
|---|
| 10 | #************* Title of helpfile !! and start of real helpfile ******** |
|---|
| 11 | TITLE Count different chars/column |
|---|
| 12 | |
|---|
| 13 | OCCURRENCE ARB_NT/SAI/Other functions/Count different chars/column |
|---|
| 14 | |
|---|
| 15 | DESCRIPTION For each column in the alignment of the marked species, |
|---|
| 16 | count the number of different base characters occurring. |
|---|
| 17 | |
|---|
| 18 | Write result as SAI 'COUNTED_CHARS' with the following |
|---|
| 19 | interpretation: |
|---|
| 20 | |
|---|
| 21 | '0' empty column |
|---|
| 22 | '1' only 1 base in this column (conserved column) |
|---|
| 23 | '2'..'9' 2..9 different bases occurred |
|---|
| 24 | 'A'..'Z' 10..25 different bases occurred |
|---|
| 25 | |
|---|
| 26 | NOTES None |
|---|
| 27 | |
|---|
| 28 | EXAMPLES None |
|---|
| 29 | |
|---|
| 30 | WARNINGS None |
|---|
| 31 | |
|---|
| 32 | BUGS No bugs known |
|---|
Note: See
TracBrowser
for help on using the repository browser.
