| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | UP treeadm.hlp |
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| 5 | |
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| 6 | #Please insert subtopic references (line starts with keyword SUB) |
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| 7 | #SUB subtopic.hlp |
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| 8 | |
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| 9 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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| 10 | |
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| 11 | #************* Title of helpfile !! and start of real helpfile ******** |
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| 12 | TITLE Load tree from file |
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| 13 | |
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| 14 | OCCURRENCE ARB_NT/Tree Admin/Import |
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| 15 | |
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| 16 | DESCRIPTION Allows to import a tree written in Newick format. |
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| 17 | |
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| 18 | Press the 'IMPORT' button to display the 'TREE LOAD' window. |
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| 19 | |
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| 20 | Select a tree file from the 'Directories and Files' subwindow or |
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| 21 | type the file name to the 'FILE NAME' subwindow. |
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| 22 | |
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| 23 | Specify a tree name ('tree_*') by typing it to the 'tree_name:' |
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| 24 | subwindow. |
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| 25 | |
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| 26 | Press the 'LOAD' button. |
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| 27 | |
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| 28 | NOTES If a suffix is displayed in or typed to the 'SUFFIX' subwindow, |
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| 29 | only the corresponding file names will be displayed. The suffix |
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| 30 | is automatically appended to the file name typed to the 'FILE |
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| 31 | NAME' subwindow. |
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| 32 | |
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| 33 | SECTION FORMAT |
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| 34 | |
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| 35 | The format recognized by ARB is a slightly enhanced Newick format. |
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| 36 | |
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| 37 | Newick format specification: |
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| 38 | |
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| 39 | LINK{http://evolution.genetics.washington.edu/phylip/newick_doc.html} |
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| 40 | |
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| 41 | ARB enhancement: |
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| 42 | |
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| 43 | If the 'internal_node_label' contains 'number' it is interpreted as bootstrap value. |
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| 44 | |
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| 45 | If the 'internal_node_label' contains 'number:name' number is interpreted as bootstrap value, |
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| 46 | and name is interpreted as group name. |
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| 47 | |
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| 48 | If the 'internal_node_label' contains 'name' it is interpreted as group name. |
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| 49 | |
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| 50 | EXAMPLES None |
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| 51 | |
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| 52 | WARNINGS The IDs associated with terminal nodes have to be |
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| 53 | consistent with those of the current database! |
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| 54 | |
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| 55 | Never give your groups numeric names or the ARB Newick enhancement will not work for you! |
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| 56 | |
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| 57 | BUGS No bugs known |
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