Last change
on this file was
17593,
checked in by westram, 6 years ago
|
- reintegrates 'fix' into 'trunk'
- performs #798
- adds genetic code (24-31)
- adds combined amino acid J (I or L)
- improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
- error messages now always list EMBL numbers
- adds:
|
File size:
1.5 KB
|
Line | |
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1 | #Please insert up references in the next lines (line starts with keyword UP) |
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2 | UP arb.hlp |
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3 | UP glossary.hlp |
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4 | |
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5 | #Please insert subtopic references (line starts with keyword SUB) |
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6 | SUB translate_dna_2_pro.hlp |
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7 | SUB proteinViewer.hlp |
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8 | |
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9 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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10 | |
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11 | #************* Title of helpfile !! and start of real helpfile ******** |
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12 | TITLE Translation tables |
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13 | |
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14 | DESCRIPTION Translation tables are also referred to as 'Codon tables' or 'Genetic codes'. |
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15 | |
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16 | ARB currently knows the translation tables as defined by |
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17 | LINK{https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi} |
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18 | (last update of the Genetic Codes: Nov. 18, 2016) |
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19 | # LAST_UPDATE_FROM_WEBPAGE |
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20 | |
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21 | ARB uses a database field called 'transl_table' which contains the |
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22 | genetic code number. It normally occurs together with 'codon_start' in |
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23 | * species (see LINK{realign_dna.hlp}) or |
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24 | * gene (see LINK{genes.hlp}) |
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25 | |
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26 | NOTES 'Mold/Protozoan/Coelenterate Mitochondrial Code' and |
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27 | 'Mycoplasma/Spiroplasma Code' are identical (genetic code 4). |
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28 | For that reason the latter has been removed and the combined name |
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29 | has been abbreviated as 'Coelenterate Mitochondrial + Mycoplasma/Spiroplasma'. |
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30 | |
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31 | Please note LINK{aaali.hlp} |
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32 | |
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33 | EXAMPLES None |
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34 | |
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35 | WARNINGS None |
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36 | |
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37 | BUGS No bugs known |
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