|
Last change
on this file was
16766,
checked in by westram, 6 years ago
|
|
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.5 KB
|
| Line | |
|---|
| 1 | #ifndef PRD_NODE_HXX |
|---|
| 2 | #define PRD_NODE_HXX |
|---|
| 3 | |
|---|
| 4 | #include <cstdio> |
|---|
| 5 | #ifndef PRD_GLOBALS_HXX |
|---|
| 6 | #include "PRD_Globals.hxx" |
|---|
| 7 | #endif |
|---|
| 8 | |
|---|
| 9 | class Node : virtual Noncopyable { |
|---|
| 10 | void init(Node* parent_, char base_, PRD_Sequence_Pos last_index_, PRD_Sequence_Pos offset_); |
|---|
| 11 | |
|---|
| 12 | public: |
|---|
| 13 | Node *parent; |
|---|
| 14 | Node *child[4]; // 0=C 1=G 2=A 3=T/U |
|---|
| 15 | unsigned char base; |
|---|
| 16 | unsigned int child_bits : 4; // see BitField in PRD_Globals.hxx |
|---|
| 17 | PRD_Sequence_Pos offset; // index of base in sequence : left = index of first base of primer, right = index of last base of primer |
|---|
| 18 | PRD_Sequence_Pos last_base_index; // abs(last_base_index) = pos (last_base_index > 0) ? valid : invalid |
|---|
| 19 | |
|---|
| 20 | Node (Node* parent_, char base_, PRD_Sequence_Pos last_index_, PRD_Sequence_Pos offset_); |
|---|
| 21 | Node (Node* parent_, char base_, PRD_Sequence_Pos last_index_); |
|---|
| 22 | Node (Node* parent_, char base_); |
|---|
| 23 | Node (); |
|---|
| 24 | ~Node (); |
|---|
| 25 | |
|---|
| 26 | Node *childByBase (unsigned char base_) { return child[CHAR2CHILD.INDEX[base_]]; }; |
|---|
| 27 | bool isValidPrimer () { return last_base_index > 0; }; |
|---|
| 28 | bool isPrimer () { return last_base_index != 0; } |
|---|
| 29 | bool isLeaf () { return child_bits == 0; }; |
|---|
| 30 | void print (); // print subtree started here |
|---|
| 31 | |
|---|
| 32 | }; |
|---|
| 33 | |
|---|
| 34 | #else |
|---|
| 35 | #error PRD_Node.hxx included twice |
|---|
| 36 | #endif // PRD_NODE_HXX |
|---|
Note: See
TracBrowser
for help on using the repository browser.
