source: branches/stable/PROBE/PT_global_defs.h

Last change on this file was 8535, checked in by westram, 12 years ago
  • scaling of relative scores in 'Next neighbour search' can be configured now
    • scale vs source or target POC (or min/max of both)
    • added toggles to 'Search next neighbours of …'
    • added tests
  • help (score/scaling)
    • describe new options
    • fix wrong facts
File size: 1.3 KB
Line 
1// ============================================================= //
2//                                                               //
3//   File      : PT_global_defs.h                                //
4//   Purpose   : global defines for pt-server and its clients    //
5//                                                               //
6//   Coded by Ralf Westram (coder@reallysoft.de) in March 2012   //
7//   Institute of Microbiology (Technical University Munich)     //
8//   http://www.arb-home.de/                                     //
9//                                                               //
10// ============================================================= //
11
12#ifndef PT_GLOBAL_DEFS_H
13#define PT_GLOBAL_DEFS_H
14
15enum FF_complement { 
16    FF_FORWARD            = 1,
17    FF_REVERSE            = 2,
18    FF_REVERSE_COMPLEMENT = 4,
19    FF_COMPLEMENT         = 8,
20
21    // do NOT change the order here w/o fixing ../PROBE/PT_family.cxx@FF_complement_dep
22};
23
24enum RelativeScoreScaling {
25    RSS_BOTH_MIN = 0, // scale versus minimum basecount of source+target seq (hardcoded before [8520])
26    RSS_BOTH_MAX,     // scale versus maximum basecount of source+target seq
27    RSS_SOURCE,       // scale versus source basecount
28    RSS_TARGET,       // scale versus target basecount
29};
30
31#else
32#error PT_global_defs.h included twice
33#endif // PT_GLOBAL_DEFS_H
Note: See TracBrowser for help on using the repository browser.