source: branches/stable/SL/FAST_ALIGNER/Makefile

Last change on this file was 17724, checked in by westram, 6 years ago
  • partial merge from 'fts' into 'trunk'
    • ConfigMapping:
      • cleanup
      • add missing tests
      • fix config bug: trailing backslash at end of values did cause wrong read of data
  • adds: log:branches/fts@17718:17723
File size: 5.4 KB
Line 
1# for variables passed from parent makefile see ../../SOURCE_TOOLS/parent_make.txt
2
3.SUFFIXES: .o .c .cxx .depend
4
5C_OBJECTS = 
6CPP_OBJECTS = $(subst .cxx,.o,$(wildcard *.cxx))
7OBJECTS=$(C_OBJECTS) $(CPP_OBJECTS)
8
9$(MAIN): $(OBJECTS)
10        $(LINK_STATIC_LIB) $(MAIN) $(OBJECTS)
11
12.cxx.o:
13        $(A_CXX) $(cflags) $(cxxflags) -c $< $(CXX_INCLUDES) $(POST_COMPILE) $<
14
15.c.o:
16        $(A_CC) $(cflags) -c $< $(CC_INCLUDES) $(POST_COMPILE) $<
17
18clean:
19        rm -f $(OBJECTS) *.a
20
21DEPENDS = $(OBJECTS:.o=.depend)
22depends: $(DEPENDS)
23        @cat $(DEPENDS) | grep -v '^#' >>Makefile
24        @rm $(DEPENDS)
25$(DEPENDS): depend.init
26depend.init:
27        $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies
28.c.depend:
29        $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
30.cxx.depend:
31        $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
32
33# DO NOT DELETE
34
35# Do not add dependencies manually - use 'make depend' in $ARBHOME
36# For formatting issues see SOURCE_TOOLS/fix_depends.pl (from SL)
37
38ClustalV.o: ClustalV.hxx
39ClustalV.o: seq_search.hxx
40ClustalV.o: $(ARBHOME)/INCLUDE/arb_assert.h
41ClustalV.o: $(ARBHOME)/INCLUDE/arb_core.h
42ClustalV.o: $(ARBHOME)/INCLUDE/arb_error.h
43ClustalV.o: $(ARBHOME)/INCLUDE/arb_global_defs.h
44ClustalV.o: $(ARBHOME)/INCLUDE/arb_mem.h
45ClustalV.o: $(ARBHOME)/INCLUDE/arb_string.h
46ClustalV.o: $(ARBHOME)/INCLUDE/arbdb_base.h
47ClustalV.o: $(ARBHOME)/INCLUDE/arbtools.h
48ClustalV.o: $(ARBHOME)/INCLUDE/attributes.h
49ClustalV.o: $(ARBHOME)/INCLUDE/aw_base.hxx
50ClustalV.o: $(ARBHOME)/INCLUDE/aw_msg.hxx
51ClustalV.o: $(ARBHOME)/INCLUDE/BI_basepos.hxx
52ClustalV.o: $(ARBHOME)/INCLUDE/cxxforward.h
53ClustalV.o: $(ARBHOME)/INCLUDE/dupstr.h
54ClustalV.o: $(ARBHOME)/INCLUDE/gccver.h
55ClustalV.o: $(ARBHOME)/INCLUDE/smartptr.h
56ClustalV.o: $(ARBHOME)/INCLUDE/test_global.h
57ClustalV.o: $(ARBHOME)/INCLUDE/test_unit.h
58
59fast_aligner.o: ClustalV.hxx
60fast_aligner.o: fast_aligner.hxx
61fast_aligner.o: seq_search.hxx
62fast_aligner.o: $(ARBHOME)/INCLUDE/ad_cb.h
63fast_aligner.o: $(ARBHOME)/INCLUDE/ad_cb_prot.h
64fast_aligner.o: $(ARBHOME)/INCLUDE/ad_prot.h
65fast_aligner.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
66fast_aligner.o: $(ARBHOME)/INCLUDE/arb_assert.h
67fast_aligner.o: $(ARBHOME)/INCLUDE/arb_core.h
68fast_aligner.o: $(ARBHOME)/INCLUDE/arb_defs.h
69fast_aligner.o: $(ARBHOME)/INCLUDE/arb_error.h
70fast_aligner.o: $(ARBHOME)/INCLUDE/arb_global_defs.h
71fast_aligner.o: $(ARBHOME)/INCLUDE/arb_mem.h
72fast_aligner.o: $(ARBHOME)/INCLUDE/arb_msg.h
73fast_aligner.o: $(ARBHOME)/INCLUDE/arb_progress.h
74fast_aligner.o: $(ARBHOME)/INCLUDE/arb_strarray.h
75fast_aligner.o: $(ARBHOME)/INCLUDE/arb_string.h
76fast_aligner.o: $(ARBHOME)/INCLUDE/arb_unit_test.h
77fast_aligner.o: $(ARBHOME)/INCLUDE/arbdb.h
78fast_aligner.o: $(ARBHOME)/INCLUDE/arbdb_base.h
79fast_aligner.o: $(ARBHOME)/INCLUDE/arbdbt.h
80fast_aligner.o: $(ARBHOME)/INCLUDE/arbtools.h
81fast_aligner.o: $(ARBHOME)/INCLUDE/attributes.h
82fast_aligner.o: $(ARBHOME)/INCLUDE/aw_awar.hxx
83fast_aligner.o: $(ARBHOME)/INCLUDE/aw_awar_defs.hxx
84fast_aligner.o: $(ARBHOME)/INCLUDE/aw_awars.hxx
85fast_aligner.o: $(ARBHOME)/INCLUDE/aw_base.hxx
86fast_aligner.o: $(ARBHOME)/INCLUDE/aw_keysym.hxx
87fast_aligner.o: $(ARBHOME)/INCLUDE/aw_msg.hxx
88fast_aligner.o: $(ARBHOME)/INCLUDE/aw_question.hxx
89fast_aligner.o: $(ARBHOME)/INCLUDE/aw_root.hxx
90fast_aligner.o: $(ARBHOME)/INCLUDE/aw_window.hxx
91fast_aligner.o: $(ARBHOME)/INCLUDE/awt_config_manager.hxx
92fast_aligner.o: $(ARBHOME)/INCLUDE/awt_sel_boxes.hxx
93fast_aligner.o: $(ARBHOME)/INCLUDE/awtc_next_neighbours.hxx
94fast_aligner.o: $(ARBHOME)/INCLUDE/BI_basepos.hxx
95fast_aligner.o: $(ARBHOME)/INCLUDE/cb.h
96fast_aligner.o: $(ARBHOME)/INCLUDE/cb_base.h
97fast_aligner.o: $(ARBHOME)/INCLUDE/cbtypes.h
98fast_aligner.o: $(ARBHOME)/INCLUDE/ConfigMapping.h
99fast_aligner.o: $(ARBHOME)/INCLUDE/cxxforward.h
100fast_aligner.o: $(ARBHOME)/INCLUDE/downcast.h
101fast_aligner.o: $(ARBHOME)/INCLUDE/dupstr.h
102fast_aligner.o: $(ARBHOME)/INCLUDE/gccver.h
103fast_aligner.o: $(ARBHOME)/INCLUDE/island_hopping.h
104fast_aligner.o: $(ARBHOME)/INCLUDE/pos_range.h
105fast_aligner.o: $(ARBHOME)/INCLUDE/PT_global_defs.h
106fast_aligner.o: $(ARBHOME)/INCLUDE/RangeList.h
107fast_aligner.o: $(ARBHOME)/INCLUDE/rootAsWin.h
108fast_aligner.o: $(ARBHOME)/INCLUDE/smartptr.h
109fast_aligner.o: $(ARBHOME)/INCLUDE/static_assert.h
110fast_aligner.o: $(ARBHOME)/INCLUDE/test_global.h
111fast_aligner.o: $(ARBHOME)/INCLUDE/test_unit.h
112fast_aligner.o: $(ARBHOME)/INCLUDE/ttypes.h
113
114seq_search.o: seq_search.hxx
115seq_search.o: $(ARBHOME)/INCLUDE/ad_prot.h
116seq_search.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
117seq_search.o: $(ARBHOME)/INCLUDE/arb_assert.h
118seq_search.o: $(ARBHOME)/INCLUDE/arb_core.h
119seq_search.o: $(ARBHOME)/INCLUDE/arb_error.h
120seq_search.o: $(ARBHOME)/INCLUDE/arb_global_defs.h
121seq_search.o: $(ARBHOME)/INCLUDE/arb_mem.h
122seq_search.o: $(ARBHOME)/INCLUDE/arb_msg.h
123seq_search.o: $(ARBHOME)/INCLUDE/arb_strbuf.h
124seq_search.o: $(ARBHOME)/INCLUDE/arb_string.h
125seq_search.o: $(ARBHOME)/INCLUDE/arbdb.h
126seq_search.o: $(ARBHOME)/INCLUDE/arbdb_base.h
127seq_search.o: $(ARBHOME)/INCLUDE/arbdbt.h
128seq_search.o: $(ARBHOME)/INCLUDE/arbtools.h
129seq_search.o: $(ARBHOME)/INCLUDE/attributes.h
130seq_search.o: $(ARBHOME)/INCLUDE/aw_base.hxx
131seq_search.o: $(ARBHOME)/INCLUDE/aw_msg.hxx
132seq_search.o: $(ARBHOME)/INCLUDE/BI_basepos.hxx
133seq_search.o: $(ARBHOME)/INCLUDE/cxxforward.h
134seq_search.o: $(ARBHOME)/INCLUDE/downcast.h
135seq_search.o: $(ARBHOME)/INCLUDE/dupstr.h
136seq_search.o: $(ARBHOME)/INCLUDE/gccver.h
137seq_search.o: $(ARBHOME)/INCLUDE/smartptr.h
138seq_search.o: $(ARBHOME)/INCLUDE/static_assert.h
139seq_search.o: $(ARBHOME)/INCLUDE/test_global.h
140seq_search.o: $(ARBHOME)/INCLUDE/test_helpers.h
141seq_search.o: $(ARBHOME)/INCLUDE/test_unit.h
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