|
Last change
on this file was
5768,
checked in by westram, 15 years ago
|
- rewrote genome importer
- remove redundant 'translation' entries of genes during import
- whole code is using
- 'pos_start' instead of 'pos_begin*'
- 'pos_stop' instead of 'pos_end*'
- 'pos_certain' instead of 'pos_uncertain*'
- 'pos_complement' instead of 'complement'
- convert gene locations in old genome DBs into new format
- added several gene functions to ARBDB
- GEN_create_nonexisting_gene…()
- GEN_find_or_create_gene..()
- GEN_global_gene_identifier()
- added code to handle gene locations into ARBDB (type GEN_position represents every flavour of a Genbank/EMBL feature location)
- added GBT_write_byte()
- rewrote GBT_read_gene_sequence() (adding GBT_read_gene_sequence_and_length)
- changed codon
 according to NCBI code info
- added start codon(s) for code 3, 9, 13
- changed code names
- when importing to a new
 , reset type if import fails (before ARB had to be restarted, after one try with wrong genome/non-genome import)
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
752 bytes
|
| Line | |
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| 1 | ARB-Input-Mask |
|---|
| 2 | # This is a simple user-mask example. |
|---|
| 3 | |
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| 4 | # What to edit |
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| 5 | @ITEMTYPE=Gene |
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| 6 | |
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| 7 | # Title of the user-mask-window |
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| 8 | @TITLE=Gene: Test mask |
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| 9 | |
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| 10 | # Spacing in window |
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| 11 | @X_SPACING=5 |
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| 12 | @Y_SPACING=3 |
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| 13 | |
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| 14 | # Show edit/reload button |
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| 15 | @EDIT=1 |
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| 16 | |
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| 17 | # --------------------------- |
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| 18 | # The definition of the mask: |
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| 19 | |
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| 20 | @MASK_BEGIN |
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| 21 | |
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| 22 | TEXT("Switch to..") OPENMASK("Basic fields (illegal mask type)","basic_fields.mask") |
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| 23 | |
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| 24 | NEW_SECTION() |
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| 25 | TEXT("You are editing '") SELF() TEXT("'") |
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| 26 | |
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| 27 | NEW_SECTION() |
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| 28 | |
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| 29 | TEXTFIELD("Name ", "name" , 40) |
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| 30 | TEXTFIELD("Start ", "pos_start" , 15) TEXTFIELD("End ", "pos_stop" , 15) CHECKBOX("Complement","pos_complement",0) |
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| 31 | |
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| 32 | TEXTFIELD("Codon start","codon_start",1) |
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| 33 | TEXTFIELD("Note ","note",50) |
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| 34 | |
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| 35 | |
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| 36 | @MASK_END |
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