|
Last change
on this file was
5768,
checked in by westram, 16 years ago
|
- rewrote genome importer
- remove redundant 'translation' entries of genes during import
- whole code is using
- 'pos_start' instead of 'pos_begin*'
- 'pos_stop' instead of 'pos_end*'
- 'pos_certain' instead of 'pos_uncertain*'
- 'pos_complement' instead of 'complement'
- convert gene locations in old genome DBs into new format
- added several gene functions to ARBDB
- GEN_create_nonexisting_gene…()
- GEN_find_or_create_gene..()
- GEN_global_gene_identifier()
- added code to handle gene locations into ARBDB (type GEN_position represents every flavour of a Genbank/EMBL feature location)
- added GBT_write_byte()
- rewrote GBT_read_gene_sequence() (adding GBT_read_gene_sequence_and_length)
- changed codon
 according to NCBI code info
- added start codon(s) for code 3, 9, 13
- changed code names
- when importing to a new
 , reset type if import fails (before ARB had to be restarted, after one try with wrong genome/non-genome import)
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
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File size:
237 bytes
|
| Line | |
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| 1 | remove all '"', :"= |
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| 2 | calculate sequence checksum, seqcheck#|sequence|"ARB_";checksum(exclude=.-n;toupper) |
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| 3 | calculate length, length#|sequence|len |
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