source: branches/tree/HELP_SOURCE/source/alignment.hlp

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1#Please insert up references in the next lines (line starts with keyword UP)
2UP      arb.hlp
3UP      glossary.hlp
4
5#Please insert subtopic references  (line starts with keyword SUB)
6SUB     nt_align_select.hlp
7SUB     ad_align.hlp
8SUB     pfold.hlp
9
10# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
11
12#************* Title of helpfile !! and start of real helpfile ********
13TITLE           What is an Alignment?
14
15DESCRIPTION     Different alignments assigned to the same species (eg. sequences
16                of different genes) can be stored in one database.
17                The name of the currently accessible alignment (ali_*) is shown
18                in the 3rd broad rectangular button in the top area of the
19                ARB_NT window.
20
21                The sequences themselves are not stored in the 'ali_*' field of
22                a species, but in the subfield 'data' of 'ali_*'
23                'ali_*' is a container field: it holds no data
24                except other data fields (like a directory in a file system).
25
26NOTE            There is a special alignment called 'ali_genom' which is used
27                for full genome databases.
28                It's called an alignment because it fits into our database structure,
29                but it should NOT contain any gaps.
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