1 | #Please insert up references in the next lines (line starts with keyword UP) |
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2 | UP arb.hlp |
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3 | UP glossary.hlp |
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4 | UP mode.hlp |
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5 | |
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6 | #Please insert subtopic references (line starts with keyword SUB) |
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7 | #SUB subtopic.hlp |
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8 | |
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9 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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10 | |
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11 | #************* Title of helpfile !! and start of real helpfile ******** |
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12 | TITLE MOVE MODE |
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13 | |
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14 | OCCURRENCE ARB_NT and ARB_PARSIMONY: <MOVE> button in the left column |
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15 | |
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16 | DESCRIPTION The 'MOVE MODE' allows to change the topology of the |
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17 | displayed tree by moving subtrees. |
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18 | |
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19 | Click on the <MOVE> button in the left column of |
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20 | the main window. |
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21 | |
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22 | Move subtree: |
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23 | |
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24 | Drag and drop a branch onto a target branch, to remove the branch |
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25 | from the tree and insert it next to the target branch. |
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26 | |
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27 | Move Group Info: |
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28 | |
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29 | Use the right mouse button to move the group information only. |
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30 | When dropped onto another group, both group informations will be |
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31 | exchanged. |
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32 | |
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33 | SECTION ARB_PARSIMONY specific |
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34 | |
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35 | Within the 'ARB_PARSIMONY' window, this mode can be used to test |
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36 | tree topologies with respect to maximum parsimony criteria by |
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37 | moving subtrees. The current parsimony value is shown after the |
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38 | 'Current Par' prompt and can be compared with the 'Optimum Par' |
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39 | value of the initial tree (see LINK{pa_value.hlp}). |
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40 | |
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41 | |
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42 | NOTES If you move group info in a tree that contains LINK{keeled_groups.hlp}, |
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43 | you'll probably encounter a special error message, |
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44 | stating that a group could not be moved because otherwise |
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45 | groups would partly overlap, which is impossible. |
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46 | |
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47 | A simple example would be the following tree (which has |
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48 | invalid group definitions): |
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49 | |
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50 | G1 = !K1 |
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51 | / |
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52 | R--- |
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53 | \ |
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54 | G2 = !K2 |
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55 | |
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56 | |
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57 | If all tags are groups here, the original groups for '!K1' and '!K2' |
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58 | would be equivalent to |
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59 | |
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60 | * K1 = R+G2 |
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61 | * K2 = R+G1 |
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62 | |
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63 | which is impossible (because K1 and K2 share R, but none of |
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64 | them is completely contained in the other). |
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65 | |
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66 | EXAMPLES None |
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67 | |
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68 | WARNINGS It is recommended to copy the tree before using the 'MOVE MODE', |
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69 | to avoid problems caused by that bug: |
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70 | |
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71 | BUGS Undo 'Move Group Info' does not work (leads to loss of groupname). |
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72 | See http://bugs.arb-home.de/ticket/496 |
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73 | |
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