| 1 | // =============================================================== // |
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| 2 | // // |
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| 3 | // File : ps_merge_my_dbs.cxx // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Coded by Wolfram Foerster in October 2002 // |
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| 7 | // Institute of Microbiology (Technical University Munich) // |
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| 8 | // http://www.arb-home.de/ // |
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| 9 | // // |
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| 10 | // =============================================================== // |
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| 11 | |
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| 12 | #include "ps_tools.hxx" |
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| 13 | #include "ps_database.hxx" |
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| 14 | |
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| 15 | #include <sys/times.h> |
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| 16 | |
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| 17 | // ==================================================== |
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| 18 | |
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| 19 | int main(int argc, char *argv[]) { |
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| 20 | |
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| 21 | if (argc < 3) { |
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| 22 | printf("Missing arguments\n Usage %s <output database name> <input database name> <input database name2> [[input3]...]\n", argv[0]); |
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| 23 | exit(1); |
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| 24 | } |
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| 25 | |
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| 26 | // |
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| 27 | // init database object |
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| 28 | // |
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| 29 | const char *input_DB_name = argv[2]; |
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| 30 | struct tms before; |
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| 31 | times(&before); |
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| 32 | printf("Opening 1st input-probe-set-database '%s'..\n", input_DB_name); |
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| 33 | PS_Database *db = new PS_Database(input_DB_name, PS_Database::READONLY); |
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| 34 | db->load(); |
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| 35 | PS_print_time_diff(&before, "(enter to continue) "); |
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| 36 | |
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| 37 | // |
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| 38 | // merge in other databasefiles |
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| 39 | // |
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| 40 | for (int i = 3; i < argc; ++i) { |
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| 41 | input_DB_name = argv[i]; |
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| 42 | printf("Appending input-probe-set-database '%s'..\n", input_DB_name); |
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| 43 | times(&before); |
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| 44 | db->merge(input_DB_name); |
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| 45 | PS_print_time_diff(&before); |
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| 46 | } |
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| 47 | printf("Merged databases (enter to continue)\n"); |
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| 48 | |
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| 49 | // |
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| 50 | // write one big whole tree to file |
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| 51 | // |
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| 52 | const char *output_DB_name = argv[1]; |
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| 53 | times(&before); |
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| 54 | printf("Writing output-probe-set-database '%s'..\n", output_DB_name); |
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| 55 | db->saveTo(output_DB_name); |
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| 56 | PS_print_time_diff(&before, "(enter to continue) "); |
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| 57 | |
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| 58 | printf("cleaning up...\n"); |
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| 59 | if (db) delete db; |
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| 60 | |
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| 61 | return 0; |
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| 62 | } |
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