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Last change
on this file was
18737,
checked in by westram, 4 years ago
|
- introduce LabelTranslator:
- use for label translation when loading
 into database (TREE_load_to_db).
- implement NOOP-translate: leaves labels as they are (=former behavior).
|
|
File size:
1.5 KB
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| Line | |
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| 1 | // ============================================================ // |
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| 2 | // // |
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| 3 | // File : TreeRead.h // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Coded by Ralf Westram (coder@reallysoft.de) in June 2009 // |
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| 7 | // Institute of Microbiology (Technical University Munich) // |
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| 8 | // www.arb-home.de // |
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| 9 | // // |
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| 10 | // ============================================================ // |
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| 11 | |
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| 12 | #ifndef TREEREAD_H |
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| 13 | #define TREEREAD_H |
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| 14 | |
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| 15 | #ifndef ARBDBT_H |
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| 16 | #include <arbdbt.h> |
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| 17 | #endif |
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| 18 | #ifndef LABELTRANSLATOR_H |
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| 19 | #include "LabelTranslator.h" |
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| 20 | #endif |
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| 21 | |
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| 22 | #define DEFAULT_BRANCH_LENGTH_MARKER -1000.0 // tree-edges w/o length are marked with this value during read and corrected in TREE_scale |
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| 23 | inline bool is_marked_as_default_len(GBT_LEN len) { return len <= DEFAULT_BRANCH_LENGTH_MARKER; } |
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| 24 | void TREE_scale(TreeNode *tree, double length_scale, double bootstrap_scale); // Note: auto-called by TREE_load + TREE_load_to_db |
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| 25 | |
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| 26 | TreeNode *TREE_load(const char *path, TreeRoot *troot, char **commentPtr, bool allow_length_scaling, char **warningPtr); |
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| 27 | GB_ERROR TREE_load_to_db(GBDATA *gb_main, const char *treefile, const char *tree_name, const LabelTranslator& translator); |
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| 28 | |
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| 29 | #else |
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| 30 | #error TreeRead.h included twice |
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| 31 | #endif // TREEREAD_H |
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