source: tags/arb-6.0

Name Size Rev Age Author Last Change
../
AISC ​ 11176   11 years westram * fixes compilation with COVERAGE!=0 (was broken by [10956])
AISC_COM ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
AISC_MKPTPS ​ 11889   11 years westram - add missing comment to closing #endif of test-sections
ARB_GDE ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
ARBDB ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
AWT ​ 12313   10 years westram * merge bugfixes from 'trunk' into 'rc' - fixes build process when …
AWTC ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
AWTI ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
bin ​ 11778   11 years westram * reintegrates 'macros' into 'trunk' - implements #456 * adds: …
BINDEP ​ 10577   11 years westram - added a bunch of small arb tools into dependency decls
BINDINGS ​ 10998   11 years westram * cflags were completely unused (untested)
BUGEX ​ 7044   14 years westram * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
CONSENSUS_TREE ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
CONVERTALN ​ 11947   11 years westram * merge misc changes from 'customize' into 'trunk' * adds: - …
CORE ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
DBSERVER ​ 11167   11 years westram - leak stuffed
DIST ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
doc ​ 6141   15 years westram * spellchecked all (phew)
EDIT4 ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
EISPACK ​ 10996   11 years westram * use cflags before cxxflags
etc ​ 6141   15 years westram * spellchecked all (phew)
GDE ​ 12313   10 years westram * merge bugfixes from 'trunk' into 'rc' - fixes build process when …
GDEHELP ​ 11886   11 years westram * reintegrates 'cleanup' into 'trunk' * adds: - …
GENOM ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
GENOM_IMPORT ​ 11844   11 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
GL ​ 11805   11 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
HEADERLIBS ​ 7895   13 years westram * added arb_rnacma (correlated mutation analysis) written by Breno …
HELP_SOURCE ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
ISLAND_HOPPING ​ 10997   11 years westram * use cflags before cxxflags (where locally modified)
lib ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
MERGE ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
MULTI_PROBE ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
NALIGNER ​ 11060   11 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
NAMES ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
NAMES_COM ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
NTREE ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
PARSIMONY ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
PERL2ARB ​ 12313   10 years westram * merge bugfixes from 'trunk' into 'rc' - fixes build process when …
PERL_SCRIPTS ​ 11805   11 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
PERLTOOLS ​ 11844   11 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
PHYLO ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
PRIMER_DESIGN ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
PROBE ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
PROBE_COM ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
PROBE_DESIGN ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
PROBE_SET ​ 11464   11 years westram - un-dummy-fied transaction (renames only)
ptpan ​ 11060   11 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
READSEQ ​ 11805   11 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
RNA3D ​ 12313   10 years westram * merge bugfixes from 'trunk' into 'rc' - fixes build process when …
RNACMA ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
SECEDIT ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
SEQ_QUALITY ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
SERVERCNTRL ​ 11915   11 years westram - changed 'server startup error' message (was to closely considering …
SH ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
SL ​ 12303   10 years westram * merge bugfixes since [12269] from 'trunk' into 'rc' * adds: - …
SOURCE_TOOLS ​ 12314   10 years westram * rc++
STAT ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
TEMPLATES ​ 12332   10 years westram * merge bugfixes from 'trunk' into 'rc' - installation @ debian …
TOOLS ​ 12313   10 years westram * merge bugfixes from 'trunk' into 'rc' - fixes build process when …
TREEGEN ​ 10996   11 years westram * use cflags before cxxflags
UNIT_TESTER ​ 12267   11 years westram * full update from 'trunk' into 'rc' - because i was (nearly) only …
util ​ 12332   10 years westram * merge bugfixes from 'trunk' into 'rc' - installation @ debian …
WETC ​ 11034   11 years westram * depends for [11033]
WINDOW ​ 12332   10 years westram * merge bugfixes from 'trunk' into 'rc' - installation @ debian …
XML ​ 11012   11 years westram * misc warnings fixed; others suppressed
XML_IMPORT ​ 10996   11 years westram * use cflags before cxxflags
arb_CHANGES.txt 16.5 KB ​ 12268   11 years westram - log fixes
arb_install.sh 14.2 KB ​ 11718   11 years westram * reverts [11717] * merge [11714] into trunk (accidentally went into …
arb_INSTALL.txt 4.6 KB ​ 12332   10 years westram * merge bugfixes from 'trunk' into 'rc' - installation @ debian …
arb_LICENSE.txt 10.8 KB ​ 10842   11 years westram * reintegrates 'help' into 'trunk': * adds: - …
arb_OS_X.txt 5.5 KB ​ 10375   11 years westram - xmkmf is unused
arb_OS_X_MacPorts.txt 370 bytes ​ 6288   15 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_README.txt 6.6 KB ​ 12332   10 years westram * merge bugfixes from 'trunk' into 'rc' - installation @ debian …
arb_UBUNTU.txt 1.3 KB ​ 10420   11 years epruesse - work around linking bug in centos5 - add libreadline-dev to ubuntu …
arbsrc_README.txt 210 bytes ​ 6288   15 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 2.1 KB ​ 7331   14 years westram - tested and added gcc 4.5.2
config.makefile.template 1.7 KB ​ 12332   10 years westram * merge bugfixes from 'trunk' into 'rc' - installation @ debian …
demo.arb 78.9 KB ​ 7664   13 years westram * merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524] …
Doxyfile 62.3 KB ​ 11492   11 years westram * fix several doxygen issues (doxygen 1.6.3) - force macro …
Makefile 65.4 KB ​ 12313   10 years westram * merge bugfixes from 'trunk' into 'rc' - fixes build process when …
README 717 bytes ​ 5390   16 years westram - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
    *.bak
    arb_time.log
    latest.patch
    patches.arb
    makeloc.here
    interdiff.patch
    white.patch
    latest_iwhite.patch
    nbproject
    fulldiff.patch
    untested.patch
    *.last_compiler
    arb-dev.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /branches/alilink11490-11577
    /branches/help10647-10841
    /branches/tree10290-10481,​10500-11400,​11403-11422,​11425-11487,​11556-11559,​12004-12019,​12116-12120
    /trunk11971-12260,​12271-12276,​12278,​12282-12297,​12299-12302,​12307-12312,​12326-12331
    /branches/aci10844-11080
    /branches/bpcb10161-10208
    /branches/bpcbold10163-10164,​10180,​10182-10185,​10191-10192
    /branches/bugrep11744-11753
    /branches/cleanup11876-11885
    /branches/customize11828-11873,​11913-11947,​11950-11967
    /branches/cxx119320-9515
    /branches/db9626-9836
    /branches/dbcb9731-9739
    /branches/dbui10305-10348
    /branches/deb11801-11814
    /branches/dev7288-7291,​7294-7296,​7824-7828,​7830,​7833-7834,​7837-7838,​7841-7843,​7845-7848,​7876-7877,​7912,​7914,​7938-7939,​7942-7943,​7967,​7969-7970,​7972-7974,​7976-7977,​9506-9507
    /branches/dev_elmar7699-8224
    /branches/dist11501-11512
    /branches/e4fix8134-8632
    /branches/fix11579-11625,​11890-11901,​11904-11910,​11985-11997,​12008-12013,​12023-12042,​12049-12053,​12058-12137,​12147-12156
    /branches/fixMergeinfo9177-9181
    /branches/gcc12076-12079
    /branches/gtk9379,​9432
    /branches/gtk_only9554,​9698,​9745,​9749,​10108
    /branches/helptest10585-10720
    /branches/macros9677-9841,​11761-11777,​11780-11797
    /branches/macros29840-10082
    /branches/merge9691-9796
    /branches/nds10485-10493
    /branches/ptsdump8966-9000
    /branches/ptsfix8965-11059
    /branches/ptsstartup9160-9446
    /branches/ptsundef9061-9358
    /branches/rc11679-11696,​11714
    /branches/redev11088-11125
    /branches/sai9504-9632,​9639-11520
    /branches/saiali8634-9188
    /branches/stable_5.08635,​8655,​9163-9164,​9166,​9171
    /branches/treeTests11198-11335
    /branches/xpmfix9770-9776
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